Construct: ORF ccsbBroadEn_04538
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001709.1_s300c1, BRDN0000390532
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TIGD7 (91151)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91151 | TIGD7 | tigger transposable element... | NM_033208.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1713
- ORF length:
- 1647
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAA TAAGAGAGGG AAATATACAA CACTGAATTT GGAGGAGAAA ATGAAGGTTC 121 TAAGTAGAAT TGAAGCTGGA CGATCACTTA AAAGTGTAAT GGATGAATTT GGAATCAGTA 181 AGTCAACATT TTATGACATT AAAAAAAATA AGAAGTTAAT TCTGGACTTT GTACTGAAGC 241 AGGACATGCC ATTAGTAGGG GCTGAGAAGA GAAAGAGGAC AACGGGAGCC AAATATGGTG 301 ATGTAGATGA TGCGGTCTAC ATGTGGTACC AACAGAAACG CTCAGCCGGT GTTCCGGTAA 361 GAGGCGTGGA GCTTCAGGCT GCTGCAGAGA GATTTGCACG GTGTTTTGGG CGAACAGATT 421 TCAAAGCTAG CACTGGTTGG CTTTTTAGAT TTCGAAATCG GCATGCAATT GGGAACCGAA 481 AAGGATGTGG GGAACAAGTC CTAAGTTCAG TTTCTGAAAA TGTTGAGCCA TTTCGACAAA 541 AACTGTCCAT GATAATCAAA GAGGAGAAAC TGTGTCTAGC TCAGCTATAC AGTGGGGATG 601 AAACAGACCT CTTTTGGAAG TCAATGCCAG AAAATTCTCA GGCAAGTAGG AAAGATATCT 661 GCCTACCAGG GAAGAAAATA AACAAAGAAA GGTTGTCTGC CTTTTTATGT GCAAATGCAG 721 ACGGAACTCA TAAATTAAAG TCAATCATTA TTGGAAAATC AAAACTGCCC AAAAGTGTGA 781 AAGAGGACAC AAGTACATTG CCTGTGATAT ATAAACCCAG TAAAGATGTT TGGTTCACCA 841 GAGAATTGTT TTCAGAATGG TTTTTTCAAA ACTTTGTTCC TGAGGTCCGA CATTTTCAAC 901 TTAATGTTCT AAGATTTCAT GACGAGGACG TCAGGGCATT GTTACTTCTG GACAGTTGCC 961 CGGCTCATCC TTCCTCTGAA TCCCTAACCA GTGAGGATGG TCGAATAAAA TGTATGTTCT 1021 TCCCCCATAA CACTTCAACC TTGATTCAAC CAATGAATCA AGGTGTGATC TTGAGCTGCA 1081 AACGGCTGTA TAGATGGAAG CAACTTGAAG AGAGTCTTGT AATATTTGAA GAAAGTGATG 1141 ATGAGCAAGA GAAAGGAGAT AAAGGAGTTT CCAAAATTAA AATCTACAAT ATAAAAAGTG 1201 CAATTTTTAA CTGGGCAAAA AGTTGGGAAG AAGTAAAACA AATAACCATA GCAAATGCAT 1261 GGGAAAATCT TCTTTACAAA AAGGAACCTG AATATGATTT TCAAGGCTTA GAACATGGGG 1321 ATTATAGAGA AATTCTTGAA AAATGTGGGG AGTTGGAAAC TAAGTTGGAT GATGATAGGG 1381 TGTGGTTAAA TGGAGATGAA GAAAAGGGTT GTCTCCTAAA AACCAAAGGT GGAATAACAA 1441 AGGAAGTTGT TCAAAAAGGA GGAGAAGCTG AGAAGCAGAC TGCTGAATTT AAATTATCTG 1501 CTGTAAGAGA GAGTTTGGAC TACCTTCTTG ACTTTGTTGA TGCCACACCT GAGTTTCAGA 1561 GATTCCACTT CACACTGAAA GAGATGCAAC AAGAAATAGT CAAGAAACAG TTCCAGAGTA 1621 AAATCCATTC TAGAATTGGT AGCTTTTTGA AACCTAGGCC TCATAATATT AAGGACTCCT 1681 TCAGTGGGCC TTCAACTTCT GGTTCTAATC ATTACCCAAC TTTCTTGTAC AAAGTtggca 1741 ttataagaaa gcattgctta tcaatttgtt gcaacgaac