Construct: ORF ccsbBroadEn_04622
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014830.1_s300c1, BRDN0000455654
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TP53INP1 (94241)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 94241 | TP53INP1 | tumor protein p53 inducible... | NM_033285.4 | 100% | 100% | |
| 2 | human | 94241 | TP53INP1 | tumor protein p53 inducible... | XM_011517386.2 | 100% | 100% | |
| 3 | human | 94241 | TP53INP1 | tumor protein p53 inducible... | NM_001135733.2 | 67.3% | 66.2% | (many diffs) |
| 4 | mouse | 60599 | Trp53inp1 | transformation related prot... | NM_021897.3 | 87.9% | 87.5% | (many diffs) |
| 5 | mouse | 60599 | Trp53inp1 | transformation related prot... | NM_001199105.1 | 60.2% | 58.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 789
- ORF length:
- 720
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTTCCAGAGG CTGAATAAAA TGTTTGTGGG TGAAGTCAGT TCTTCCTCCA 121 ACCAAGAACC AGAATTCAAT GAGAAAGAAG ATGATGAATG GATTCTTGTT GACTTCATAG 181 ATACTTGCAC TGGTTTCTCA GCAGAAGAAG AAGAAGAAGA GGAGGACATC AGTGAAGAGT 241 CACCTACTGA GCACCCTTCA GTCTTTTCCT GTTTACCGGC ATCTCTTGAG TGCTTGGCTG 301 ATACAAGTGA TTCCTGCTTT CTCCAGTTTG AGTCATGTCC AATGGAGGAG AGCTGGTTTA 361 TCACCCCACC CCCATGTTTT ACTGCAGGTG GATTAACCAC TATCAAGGTG GAAACAAGTC 421 CTATGGAAAA CCTTCTCATT GAACATCCCA GCATGTCTGT CTATGCTGTG CATAACTCCT 481 GCCCTGGTCT CAGTGAGGCC ACCCGTGGGA CTGATGAATT ACATAGCCCA AGTAGTCCCA 541 GAGTGGAAGC TCAAAATGAA ATGGGGCAGC ATATTCATTG TTATGTTGCA GCTCTTGCTG 601 CTCATACAAC TTTTCTGGAA CAACCCAAGA GCTTTCGCCC TTCCCAGTGG ATAAAAGAAC 661 ACAGTGAAAG ACAGCCTCTT AACAGAAATA GCCTTCGTCG CCAAAATCTT ACCAGGGATT 721 GCCACCCTCG GCAAGTCAAG CACAATGGCT GGGTTGTTCA TCAGCCCTGC CCGCGTCAGT 781 ACAATTACTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 841 tttgttgcaa cgaac