Construct: ORF ccsbBroadEn_04636

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017448.1_s300c1, BRDN0000456559
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NACC1 (112939)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 112939 NACC1 nucleus accumbens associated 1 NM_052876.4 100% 100%
2 human 112939 NACC1 nucleus accumbens associated 1 XM_005259721.3 100% 100%
3 mouse 66830 Nacc1 nucleus accumbens associate... NM_025788.3 82.2% 87.5% (many diffs)
4 mouse 66830 Nacc1 nucleus accumbens associate... XM_006531292.2 82.2% 87.5% (many diffs)
5 mouse 66830 Nacc1 nucleus accumbens associate... XM_006531293.3 82.2% 87.5% (many diffs)
6 mouse 66830 Nacc1 nucleus accumbens associate... XM_006531294.3 82.2% 87.5% (many diffs)
7 mouse 66830 Nacc1 nucleus accumbens associate... XM_006531295.3 77.9% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1647
ORF length:
1581
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CCAGACACTG CAGATGGAGA TCCCGAACTT CGGCAACAGC ATCCTGGAGT
121GCCTCAATGA ACAGCGGCTG CAGGGCCTGT ACTGTGACGT GTCAGTGGTG GTCAAGGGCC
181ATGCCTTCAA GGCCCACCGG GCCGTGCTTG CTGCCAGCAG CTCCTACTTC CGGGACCTGT
241TCAACAACAG CCGCAGCGCC GTGGTGGAGC TGCCGGCGGC TGTGCAGCCC CAGTCTTTCC
301AGCAGATCCT CAGCTTCTGC TACACGGGCC GGCTGAGCAT GAACGTGGGC GACCAGTTCC
361TGCTCATGTA CACGGCTGGC TTCCTGCAGA TCCAGGAGAT CATGGAGAAG GGCACCGAGT
421TCTTCCTCAA GGTGAGCTCC CCGAGCTGCG ACTCCCAGGG CCTGCATGCG GAGGAGGCCC
481CATCGTCGGA GCCCCAGAGC CCCGTGGCGC AGACATCGGG CTGGCCAGCC TGTAGCACCC
541CGCTGCCCCT CGTGTCGCGG GTGAAGACGG AGCAGCAGGA GTCGGACTCC GTGCAGTGCA
601TGCCCGTGGC CAAGCGGCTG TGGGACAGTG GCCAGAAGGA GGCTGGGGGC GGCGGCAATG
661GCAGCCGCAA GATGGCCAAG TTCTCCACGC CGGACCTGGC TGCCAACCGG CCTCACCAGC
721CCCCGCCACC CCAACAGGCT CCGGTGGTGG CAGCAGCCCA GCCCGCCGTG GCTGCGGGAG
781CAGGGCAGCC AGCCGGTGGG GTGGCAGCAG CAGGGGGTGT GGTGAGTGGG CCCAGCACGT
841CGGAGCGGAC CAGCCCAGGC ACCTCAAGCG CCTACACCAG CGACAGCCCT GGCTCCTACC
901ACAATGAGGA GGACGAGGAG GAGGATGGTG GCGAGGAGGG CATGGATGAG CAGTACCGGC
961AGATCTGCAA CATGTACACC ATGTACAGCA TGATGAACGT CGGCCAGACA GCCGAGAAGG
1021TGGAGGCCCT CCCGGAGCAG GTAGCCCCCG AGTCCCGAAA TCGCATCCGG GTTCGGCAAG
1081ACCTGGCGTC TCTCCCGGCT GAACTTATCA ACCAGATTGG GAACCGCTGC CACCCCAAGC
1141TCTACGACGA GGGCGACCCC TCTGAGAAGC TGGAGCTGGT GACAGGCACC AACGTGTACA
1201TCACAAGGGC GCAGCTGATG AACTGCCACG TCAGCGCAGG CACGCGGCAC AAGGTCCTAC
1261TGCGGCGGCT CCTGGCCTCC TTCTTTGACC GGAACACGCT GGCCAACAGC TGCGGCACCG
1321GCATCCGCTC TTCTACCAAC GATCCCCGTC GGAAGCCCCT GGACAGCCGC GTGCTCCACG
1381CTGTCAAGTA CTACTGCCAG AACTTCGCCC CCAACTTCAA GGAGAGCGAG ATGAATGCCA
1441TCGCGGCCGA CATGTGCACC AACGCCCGCC GCGTCGTGCG CAAGAGCTGG ATGCCCAAGG
1501TCAAGGTGCT CAAGGCTGAG GATGACGCCT ACACCACCTT CATCAGTGAA ACGGGCAAGA
1561TCGAGCCGGA CATGATGGGT GTGGAGCATG GCTTCGAGAC CGCCAGCCAC GAGGGCGAGG
1621CGGGTCCCTC GGCTGAAGCC CTGCAGTACC CAACTTTCTT GTACAAAGTT GGcattataa
1681gaaagcattg cttatcaatt tgttgcaacg aac

Download FASTA (ORF) (Full)

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