Transcript: Mouse XM_006531295.3

PREDICTED: Mus musculus nucleus accumbens associated 1, BEN and BTB (POZ) domain containing (Nacc1), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Nacc1 (66830)
Length:
4271
CDS:
243..1706

Additional Resources:

NCBI RefSeq record:
XM_006531295.3
NBCI Gene record:
Nacc1 (66830)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006531295.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000304654 TGAGGTTCTCCAGTAACATAC pLKO_005 1691 CDS 100% 10.800 15.120 N Nacc1 n/a
2 TRCN0000304653 AGCGGCTACAGGGACTATACT pLKO_005 310 CDS 100% 5.625 7.875 N Nacc1 n/a
3 TRCN0000071337 GCAAGATAGAACCGGACATGA pLKO.1 1612 CDS 100% 4.950 6.930 N Nacc1 n/a
4 TRCN0000304652 TGAACATGGGAGACCAGTTTC pLKO_005 517 CDS 100% 10.800 7.560 N Nacc1 n/a
5 TRCN0000168219 CAAGTACTACTGCCAGAACTT pLKO.1 1439 CDS 100% 4.950 3.465 N NACC1 n/a
6 TRCN0000071333 CGCATCCATTGTTACTGGTTT pLKO.1 3145 3UTR 100% 4.950 3.465 N Nacc1 n/a
7 TRCN0000304651 CTATCACACCCTCACCTATCA pLKO_005 1748 3UTR 100% 4.950 3.465 N Nacc1 n/a
8 TRCN0000145232 GCTGAACTTATCAACCAGATT pLKO.1 1152 CDS 100% 4.950 3.465 N NACC1 n/a
9 TRCN0000071336 GAGAGCGAGATGAATGCCATT pLKO.1 1476 CDS 100% 4.050 2.835 N Nacc1 n/a
10 TRCN0000302175 GAGAGCGAGATGAATGCCATT pLKO_005 1476 CDS 100% 4.050 2.835 N Nacc1 n/a
11 TRCN0000071334 GCTTCCTTCTTTGACCGGAAT pLKO.1 1329 CDS 100% 4.050 2.835 N Nacc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006531295.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_04636 pDONR223 100% 77.9% 82.8% None (many diffs) n/a
2 ccsbBroad304_04636 pLX_304 0% 77.9% 82.8% V5 (many diffs) n/a
3 TRCN0000479634 TTGCCTTCCTCCCGTCTACTTCGA pLX_317 19.6% 77.9% 82.8% V5 (many diffs) n/a
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