Construct: ORF ccsbBroadEn_04669
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008178.1_s300c1, BRDN0000395471
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GPRASP2 (114928)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114928 | GPRASP2 | G protein-coupled receptor ... | NM_001004051.4 | 100% | 100% | |
| 2 | human | 114928 | GPRASP2 | G protein-coupled receptor ... | NM_001184874.2 | 100% | 100% | |
| 3 | human | 114928 | GPRASP2 | G protein-coupled receptor ... | NM_001184875.2 | 100% | 100% | |
| 4 | human | 114928 | GPRASP2 | G protein-coupled receptor ... | NM_001184876.3 | 100% | 100% | |
| 5 | human | 100528062 | ARMCX5-GPRASP2 | ARMCX5-GPRASP2 readthrough | NM_001199818.1 | 100% | 100% | |
| 6 | human | 114928 | GPRASP2 | G protein-coupled receptor ... | NM_138437.6 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2580
- ORF length:
- 2514
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGGGGCAGAG ATTGAGCCTA GTGCCCAGGC CAAGCCTGAA AAGAAGGCTG 121 GGGAAGAGGT TATCGCTGGG CCTGAGAGAG AGAATGATGT CCCTCTGGTG GTCAGACCCA 181 AGGTTAGGAC CCAGGCAACT ACTGGGGCAA GGCCCAAAAC TGAGACCAAG TCTGTGCCTG 241 CGGCAAGGCC CAAAACTGAG GCCCAAGCAA TGTCTGGGGC AAGGCCCAAA ACTGAGGTCC 301 AAGTAATGGG TGGTGCAAGA CCCAAAACGG AGGCTCAAGG AATCACAGGG GCCAGGCCCA 361 AAACCGATGC CAGGGCAGTA GGTGGCGCTC GTTCTAAAAC TGATGCCAAG GCAATCCCTG 421 GAGCAAGGCC CAAGGATGAG GCCCAGGCAT GGGCCCAGAG TGAATTTGGG ACTGAAGCAG 481 TGTCACAGGC AGAAGGAGTG TCCCAGACTA ATGCCGTTGC TTGGCCACTG GCCACTGCTG 541 AGTCTGGATC AGTTACTAAA TCTAAGGGCC TGTCTATGGA TAGAGAACTA GTCAATGTGG 601 ATGCTGAAAC CTTTCCTGGC ACCCAGGGTC AGAAAGGAAT CCAGCCCTGG TTTGGACCAG 661 GGGAGGAGAC TAATATGGGG TCTTGGTGCT ATTCCAGGCC CAGGGCCAGA GAGGAGGCCT 721 CTAATGAGTC TGGGTTCTGG TCAGCAGATG AGACCTCTAC AGCGTCTTCT TTCTGGACTG 781 GAGAAGAGAC AAGTGTCAGA TCATGGCCCA GGGAAGAGTC CAATACCAGG TCCAGGCACA 841 GGGCTAAACA TCAGACTAAT CCCAGGTCCA GGCCCAGATC CAAGCAAGAA GCCTATGTTG 901 ATTCCTGGTC TGGATCTGAG GATGAGGCCA GCAACCCATT CTCCTTCTGG GTTGGAGAAA 961 ATACCAATAA CTTGTTCAGG CCCAGAGTCA GGGAGGAGGC AAATATCAGG TCCAAGCTCA 1021 GGACAAATAG AGAAGATTGT TTTGAATCTG AGTCTGAAGA TGAGTTCTAT AAGCAGTCCT 1081 GGGTTTTGCC TGGAGAAGAG GCCAATAGTA GATTCAGGCA CAGAGACAAA GAAGATCCTA 1141 ATACTGCCTT GAAACTCAGG GCCCAGAAAG ATGTTGACAG TGATAGGGTC AAACAAGAAC 1201 CCAGGTTTGA GGAGGAAGTC ATTATTGGGT CCTGGTTCTG GGCAGAAAAA GAGGCCAGTT 1261 TGGAGGGTGG AGCTTCAGCA ATCTGTGAAT CTGAGCCAGG AACTGAGGAG GGGGCCATTG 1321 GCGGATCCGC GTACTGGGCT GAGGAAAAGT CCAGTTTGGG GGCTGTGGCC AGAGAAGAGG 1381 CCAAGCCGGA GTCTGAAGAA GAGGCCATAT TTGGGTCCTG GTTCTGGGAC AGAGATGAGG 1441 CCTGCTTTGA CCTAAATCCC TGTCCTGTGT ACAAGGTCAG TGATAGGTTC AGAGATGCAG 1501 CTGAGGAGCT TAATGCATCC TCCAGGCCCC AAACCTGGGA CGAGGTCACT GTTGAATTCA 1561 AACCTGGTCT TTTTCATGGG GTTGGCTTCC GATCCACAAG CCCCTTTGGA ATTCCCGAAG 1621 AGGCTTCTGA AATGCTTGAG GCAAAGCCCA AGAACCTGGA ACTTAGCCCA GAAGGAGAAG 1681 AGCAGGAATC TTTGCTTCAG CCTGATCAGC CTAGTCCTGA GTTCACATTT CAGTATGATC 1741 CTTCCTACCG GTCAGTCCGG GAAATTCGAG AGCATCTTAG GGCCAGGGAG AGTGCAGAGT 1801 CTGAGAGTTG GTCCTGCAGC TGCATACAAT GTGAGCTGAA AATTGGTTCT GAAGAGTTTG 1861 AAGAATTCCT TTTATTAATG GACAAAATTC GGGATCCTTT TATTCATGAA ATATCTAAAA 1921 TTGCAATGGG TATGAGAAGT GCTTCTCAAT TTACCCGAGA TTTCATTCGA GATTCAGGTG 1981 TTGTCTCACT TATTGAAACC TTGCTTAATT ATCCATCCTC TAGAGTTAGG ACAAGTTTTT 2041 TGGAAAATAT GATTCACATG GCTCCACCTT ATCCAAATCT AAACATGATT GAGACATTCA 2101 TATGTCAAGT GTGTGAGGAA ACCCTTGCAC ATAGTGTGGA TTCCCTTGAG CAGCTGACTG 2161 GAATAAGGAT GCTTAGACAC CTCACTATGA CTATTGACTA TCACACACTG ATTGCCAACT 2221 ATATGTCCGG GTTTCTCTCC TTATTAACCA CAGCCAATGC GAGAACGAAG TTTCACGTTC 2281 TGAAAATGCT ATTGAATTTG TCTGAAAATC CTGCTGTGGC AAAAAAACTA TTCAGTGCCA 2341 AAGCTCTTTC AATATTTGTG GGTCTCTTTA ACATAGAAGA GACAAATGAT AATATTCAAA 2401 TTGTTATTAA AATGTTTCAG AATATCAGTA ACATTATAAA AAGTGGAAAG ATGTCCTTAA 2461 TTGATGATGA TTTCAGTCTT GAGCCGCTTA TTTCTGCATT TCGTGAATTT GAGGAGTTAG 2521 CTAAGCAACT ACAAGCCCAA ATAGACAACC AAAATGATCC TGAGGTGGGA CAACAAAGTT 2581 ACCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2641 acgaac