Construct: ORF ccsbBroadEn_04681
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000199.1_s300c1, BRDN0000396633
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GBP5 (115362)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 115362 | GBP5 | guanylate binding protein 5 | NM_001134486.3 | 100% | 100% | |
| 2 | human | 115362 | GBP5 | guanylate binding protein 5 | NM_052942.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1824
- ORF length:
- 1758
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TTTAGAGATC CACATGTCAG ACCCCATGTG CCTCATCGAG AACTTTAATG 121 AGCAGCTGAA GGTTAATCAG GAAGCTTTGG AGATCCTGTC TGCCATTACG CAACCTGTAG 181 TTGTGGTAGC GATTGTGGGC CTCTATCGCA CTGGCAAATC CTACCTGATG AACAAGCTGG 241 CTGGGAAGAA CAAGGGCTTC TCTGTTGCAT CTACGGTGCA GTCTCACACC AAGGGAATTT 301 GGATATGGTG TGTGCCTCAT CCCAACTGGC CAAATCACAC ATTAGTTCTG CTTGACACCG 361 AGGGCCTGGG AGATGTAGAG AAGGCTGACA ACAAGAATGA TATCCAGATC TTTGCACTGG 421 CACTCTTACT GAGCAGCACC TTTGTGTACA ATACTGTGAA CAAAATTGAT CAGGGTGCTA 481 TCGACCTACT GCACAATGTG ACAGAACTGA CAGATCTGCT CAAGGCAAGA AACTCACCCG 541 ACCTTGACAG GGTTGAAGAT CCTGCTGACT CTGCGAGCTT CTTCCCAGAC TTAGTGTGGA 601 CTCTGAGAGA TTTCTGCTTA GGCCTGGAAA TAGATGGGCA ACTTGTCACA CCAGATGAAT 661 ACCTGGAGAA TTCCCTAAGG CCAAAGCAAG GTAGTGATCA AAGAGTTCAA AATTTCAATT 721 TGCCCCGTCT GTGTATACAG AAGTTCTTTC CAAAAAAGAA ATGCTTTATC TTTGACTTAC 781 CTGCTCACCA AAAAAAGCTT GCCCAACTTG AAACACTGCC TGATGATGAG CTAGAGCCTG 841 AATTTGTGCA ACAAGTGACA GAATTCTGTT CCTACATCTT TAGCCATTCT ATGACCAAGA 901 CTCTTCCAGG TGGCATCATG GTCAATGGAT CTCGTCTAAA GAACCTGGTG CTGACCTATG 961 TCAATGCCAT CAGCAGTGGG GATCTGCCTT GCATAGAGAA TGCAGTCCTG GCCTTGGCTC 1021 AGAGAGAGAA CTCAGCTGCA GTGCAAAAGG CCATTGCCCA CTATGACCAG CAAATGGGCC 1081 AGAAAGTGCA GCTGCCCATG GAAACCCTCC AGGAGCTGCT GGACCTGCAC AGGACCAGTG 1141 AGAGGGAGGC CATTGAAGTC TTCATGAAAA ACTCTTTCAA GGATGTAGAC CAAAGTTTCC 1201 AGAAAGAATT GGAGACTCTA CTAGATGCAA AACAGAATGA CATTTGTAAA CGGAACCTGG 1261 AAGCATCCTC GGATTATTGC TCGGCTTTAC TTAAGGATAT TTTTGGTCCT CTAGAAGAAG 1321 CAGTGAAGCA GGGAATTTAT TCTAAGCCAG GAGGCCATAA TCTCTTCATT CAGAAAACAG 1381 AAGAACTGAA GGCAAAGTAC TATCGGGAGC CTCGGAAAGG AATACAGGCT GAAGAAGTTC 1441 TGCAGAAATA TTTAAAGTCC AAGGAGTCTG TGAGTCATGC AATATTACAG ACTGACCAGG 1501 CTCTCACAGA GACGGAAAAA AAGAAGAAAG AGGCACAAGT GAAAGCAGAA GCTGAAAAGG 1561 CTGAAGCGCA AAGGTTGGCG GCGATTCAAA GGCAGAACGA GCAAATGATG CAGGAGAGGG 1621 AGAGACTCCA TCAGGAACAA GTGAGACAAA TGGAGATAGC CAAACAAAAT TGGCTGGCAG 1681 AGCAACAGAA AATGCAGGAA CAACAGATGC AGGAACAGGC TGCACAGCTC AGCACAACAT 1741 TCCAAGCTCA AAATAGAAGC CTTCTCAGTG AGCTCCAGCA CGCCCAGAGG ACTGTTAATA 1801 ACGATGATCC ATGTGTTTTA CTCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1861 agcattgctt atcaatttgt tgcaacgaac