Construct: ORF ccsbBroadEn_04740
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007213.1_s300c1, BRDN0000393962
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C11orf74 (119710)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276722.1 | 100% | 100% | |
| 2 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276723.1 | 100% | 100% | |
| 3 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276724.1 | 100% | 100% | |
| 4 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_138787.3 | 100% | 100% | |
| 5 | human | 119710 | C11orf74 | chromosome 11 open reading ... | XM_006718138.4 | 100% | 100% | |
| 6 | human | 119710 | C11orf74 | chromosome 11 open reading ... | XM_011519885.3 | 100% | 100% | |
| 7 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276725.1 | 66.5% | 66.5% | 135_136ins222 |
| 8 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276726.1 | 66.5% | 66.5% | 135_136ins222 |
| 9 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NM_001276727.1 | 66.5% | 66.5% | 135_136ins222 |
| 10 | human | 729930 | LOC729930 | chromosome 11 open reading ... | NR_077244.1 | 55.6% | (many diffs) | |
| 11 | human | 119710 | C11orf74 | chromosome 11 open reading ... | NR_077243.1 | 55.1% | 1_292del;582_583ins67;889_1013del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 729
- ORF length:
- 663
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC TGCCCATATG TCAGGATTGG AAATAATGGA TGAAGATCAA TTAATCAAAG 121 ACGTCTTGGA TAAATTCCTT AATTGTCATG AGCAAACATA TGATGAAGAA TTTCTGAACA 181 CTTTTACTCA TCTTTCACAA GAGGATCATG TGTCCAAAAG GGGAGTGTTT GGAACTGATT 241 CTTCAGAAAA CATTTTTACC TCAGCAAAAG TTACTCATAA AAATGAAGCA GATGACTACC 301 ATCTTAGAAA TAAAACCATC TTTCTTCGTA CTTCATCACA ATGTTTGGAA GAACAGGTAG 361 ATAATTTCCT AGATTTAGAA GATTTGGACA TGGATGAAGA GATTAAACCC CAAATGAGTG 421 AGGATTTGCT GCTGCTTCCA GGAGAAGTGG AGCAGGATGT AAGCACCAGC ATTCCTTCCT 481 GTATCCCTTT TGTGGCCCAG CCTCCTACCT GTGAAGTGAA GCCAAAGCCC AGTGTTAAAA 541 GAATGGACAA ACAGACGGAA GAGATACTTG GAGATGAAGT TCAACTTTTT TCACTTGATG 601 AAGAATTTGA TTATGACAAT GTGATGCTAA CCTCCAAGTT TAGTCCTGCA GAGATAGAGA 661 ACATCAAAGA GCTATGCAAG CAGCAGAAGA GAAAGGACAC CAGCCCAGAC TTAGAGAAAT 721 CCTGTGACTG CCCAACTTTC TTGTACAAAG Ttggcattat aagaaagcat tgcttatcaa 781 tttgttgcaa cgaac