Construct: ORF ccsbBroadEn_04767
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003207.1_s300c1, BRDN0000393755
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SOCS4 (122809)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 122809 | SOCS4 | suppressor of cytokine sign... | NM_080867.3 | 100% | 100% | |
| 2 | human | 122809 | SOCS4 | suppressor of cytokine sign... | NM_199421.2 | 100% | 100% | |
| 3 | human | 122809 | SOCS4 | suppressor of cytokine sign... | XM_011536425.1 | 100% | 100% | |
| 4 | human | 122809 | SOCS4 | suppressor of cytokine sign... | XM_011536426.1 | 100% | 100% | |
| 5 | mouse | 67296 | Socs4 | suppressor of cytokine sign... | NM_080843.2 | 85.5% | 86.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 68
- ORF end:
- 1388
- ORF length:
- 1320
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTT CGTACAAAAA 61 AGTTGGCATG GCAGAAAATA ATGAAAATAT TAGTAAAAAT GTAGATGTAA GGCCCAAAAC 121 TAGTCGGAGC AGAAGTGCCG ACAGAAAAGA CGGTTATGTG TGGAGTGGAA AGAAGTTATC 181 TTGGTCAAAA AAGAGTGAGA GTTATTCAGA TGCTGAGACA GTGAATGGTA TAGAGAAAAC 241 CGAAGTGTCT TTAAGGAACC AAGAAAGGAA GCACAGCTGT TCATCCATTG AGTTGGACTT 301 AGATCATTCC TGTGGGCATC GATTTTTAGG CCGATCTCTT AAACAGAAAC TGCAAGATGC 361 CGTGGGGCAG TGTTTTCCAA TAAAGAATTG TAGTAGTCGG CACTCTTCAG GGCTTCCGTC 421 TAAAAGGAAA ATTCATATCA GTGAACTCAT GTTAGATAAG TGTCCTTTCC CACCTCGATC 481 AGATTTAGCC TTTAGGTGGC ATTTTATTAA ACGACACACT GCTCCTATAA ATTCCAAATC 541 AGATGAATGG GTAAGCACAG ACTTGTCTCA GACTGAATTG AGGGATGGTC AGCTAAAACG 601 AAGAAATATG GAAGAAAATA TAAACTGTTT CTCACATACC AATGTTCAGC CCTGTGTCAT 661 AACCACCGAC AATGCTTTGT GTAGAGAAGG TCCTATGACT GGCTCTGTGA TGAACCTGGT 721 TTCAAATAAC AGTATAGAAG ATAGTGATAT GGATTCCGAT GATGAAATTC TAACACTTTG 781 CACAAGTTCC AGAAAAAGAA ACAAACCCAA ATGGGATTTG GATGATGAAA TCCTGCAGTT 841 GGAAACACCT CCTAAATACC ACACGCAGAT TGATTATGTC CACTGTCTTG TACCAGACCT 901 CCTTCAGATC AATAACAACC CATGTTACTG GGGAGTGATG GATAAATACG CAGCCGAAGC 961 ACTACTGGAA GGAAAACCAG AGGGTACCTT TTTACTTCGA GACTCAGCAC AGGAAGACTA 1021 TTTATTCTCT GTTAGTTTTA GACGCTATAG TCGTTCTCTT CATGCTAGAA TTGAACAGTG 1081 GAATCACAAC TTTAGCTTTG ATGCACATGA CCCCTGTGTC TTCCATTCTC CTGACATTAC 1141 TGGGCTCCTA GAACATTATA AGGACCCAAG CGCCTGTATG TTCTTTGAAC CACTTCTATC 1201 CACTCCCTTA ATTCGGACTT TCCCTTTTTC CCTGCAGCAT ATATGCAGAA CAGTTATTTG 1261 TAACTGTACA ACTTATGATG GCATCGATGC CCTTCCAATT CCTTCTTCTA TGAAATTATA 1321 TCTGAAGGAA TATCATTATA AATCAAAAGT TAGAGTACTC AGGATTGATG CACCAGAACA 1381 GCAATGCTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt gcttatcaat 1441 ttgttgcaac gaac