Construct: ORF ccsbBroadEn_04789
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008154.1_s300c1, BRDN0000397540
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- HEXIM2 (124790)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303437.1 | 100% | 100% | |
| 2 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303438.1 | 100% | 100% | |
| 3 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303439.1 | 100% | 100% | |
| 4 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303440.1 | 100% | 100% | |
| 5 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303441.1 | 100% | 100% | |
| 6 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303442.1 | 100% | 100% | |
| 7 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303443.1 | 100% | 100% | |
| 8 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303444.1 | 100% | 100% | |
| 9 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_144608.2 | 100% | 100% | |
| 10 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_011524306.2 | 100% | 100% | |
| 11 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_011524307.3 | 100% | 100% | |
| 12 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_011524308.3 | 100% | 100% | |
| 13 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_017024167.2 | 100% | 100% | |
| 14 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_017024170.2 | 100% | 100% | |
| 15 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_024450566.1 | 100% | 100% | |
| 16 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_024450567.1 | 100% | 100% | |
| 17 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_024450568.1 | 100% | 100% | |
| 18 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | NM_001303436.1 | 92.8% | 92.8% | 1_66del |
| 19 | human | 124790 | HEXIM2 | HEXIM P-TEFb complex subunit 2 | XM_006721687.4 | 92.5% | 92.5% | 1_69del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 924
- ORF length:
- 858
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAT GGCCACTCCG AACCAGACCG CCTGTAATGC AGAGTCACCA GTGGCCCTGG 121 AGGAGGCCAA GACCTCTGGT GCCCCGGGGA GCCCCCAAAC ACCCCCTGAG CGTCATGACT 181 CTGGTGGTTC CCTGCCCCTG ACACCGCGGA TGGAGAGCCA CTCAGAGGAT GAAGATCTTG 241 CTGGGGCTGT CGGTGGCCTG GGCTGGAACA GTAGGAGTCC CCGGACCCAG AGCCCAGGGG 301 GCTGCTCAGC GGAGGCTGTG CTGGCCCGGA AGAAACACCG TCGGCGGCCA TCGAAGCGCA 361 AAAGGCACTG GCGACCCTAC CTGGAGCTGA GCTGGGCTGA GAAACAACAG CGGGATGAGA 421 GGCAGAGCCA GAGGGCCTCC CGGGTCCGCG AAGAGATGTT CGCCAAAGGC CAGCCCGTGG 481 CCCCCTACAA CACCACCCAG TTCCTGATGA ATGACAGGGA CCCGGAGGAG CCCAACTTGG 541 ATGTGCCCCA TGGGATCTCC CACCCAGGTT CCAGTGGGGA GAGTGAGGCC GGGGACAGTG 601 ATGGGCGGGG CCGAGCGCAC GGTGAGTTCC AGCGGAAGGA CTTCTCTGAG ACTTACGAAC 661 GCTTCCACAC CGAGAGCCTG CAGGGCCGCA GCAAGCAGGA GCTGGTGCGA GACTACCTGG 721 AGCTGGAGAA GCGGCTGTCG CAGGCGGAGG AGGAGACTAG GAGGCTGCAG CAGCTGCAGG 781 CGTGCACCGG CCAGCAGTCC TGCCGCCAGG TGGAGGAGCT GGCTGCCGAG GTCCAGAGGC 841 TCCGGACCGA AAACCAGCGG CTTCGTCAGG AGAACCAGAT GTGGAACCGA GAGGGCTGCC 901 GCTGTGATGA GGAGCCGGGT ACCTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 961 agcattgctt atcaatttgt tgcaacgaac