Construct: ORF ccsbBroadEn_04857

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006483.1_s300c1, BRDN0000385304
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TRIM43 (129868)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 129868 TRIM43 tripartite motif containing 43 NM_138800.3 100% 100%
2 human 653192 TRIM43B tripartite motif containing... NM_001164464.1 99.4% 98.6% (many diffs)
3 human 653192 TRIM43B tripartite motif containing... XM_011511669.1 97.2% 96.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1404
ORF length:
1338
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGA CTCAGACTTC TCACATGCCT TCCAGAAGGA ACTCACCTGC GTCATCTGTT
121TGAACTACCT GGTAGACCCT GTCACCATCT GCTGTGGGCA CAGCTTCTGT AGGCCCTGTC
181TCTGCCTTTC GTGGGAGGAA GCCCAAAGTC CTGCAAACTG CCCTGCATGC AGGGAACCAT
241CACCGAAAAT GGACTTCAAA ACCAATATTC TTCTGAAGAA TTTAGTGACC ATTGCCAGAA
301AAGCCAGTCT CTGGCAATTC CTGAGCTCTG AGAAACAAAT ATGTGGGACC CATAGGCAAA
361CAAAGAAGAT GTTCTGTGAC ATGGACAAGA GTCTCCTCTG CTTGCTGTGC TCCAACTCTC
421AGGAGCACGG GGCTCACAAA CACCATCCCA TCGAAGAGGC AGCTGAGGAA CACCGGGAGA
481AACTCTTAAA GCAAATGAGG ATTTTATGGA AAAAGATTCA AGAAAATCAG AGAAATCTAT
541ATGAGGAGGG AAGAACAGCC TTCCTCTGGA GGGGCAATGT GGTTTTACGG GCACAGATGA
601TCAGGAATGA GTATAGGAAG CTGCATCCGG TTCTCCATAA GGAAGAAAAA CAACATTTAG
661AGAGACTGAA CAAGGAATAC CAAGAGATTT TTCAGCAACT CCAGAGAAGT TGGGTCAAAA
721TGGATCAAAA GAGTAAACAC TTGAAAGAAA TGTATCAGGA ACTAATGGAA ATGTGTCATA
781AACCAGATGT GGAGCTGCTC CAGGATTTGG GAGACATCGT GGCAAGGAGT GAGTCCGTGC
841TGCTGCACAT GCCCCAGCCT GTGAATCCAG AGCTCACTGC AGGACCCATC ACTGGACTGG
901TGTACAGGCT CAACCGCTTC CGAGTGGAAA TTTCCTTCCA TTTTGAAGTA ACCAATCACA
961ATATCAGGCT CTTTGAGGAT GTGAGAAGTT GGATGTTTAG ACGTGGACCT TTGAATTCTG
1021ACAGATCTGA CTATTTTGCT GCATGGGGAG CCAGGGTCTT CTCCTTTGGG AAACACTACT
1081GGGAGCTGGA TGTGGACAAC TCTTGTGACT GGGCTCTGGG AGTCTGTAAC AACTCCTGGA
1141TAAGGAAGAA TAGCACAATG GTTAACTCTG AGGACATATT TCTTCTTTTG TGTCTGAAGG
1201TGGATAATCA TTTCAATCTC TTGACCACCT CCCCAGTGTT TCCTCACTAC ATAGAGAAAC
1261CTCTGGGCCG GGTTGGTGTG TTTCTTGATT TTGAAAGTGG AAGTGTGAGT TTTTTGAATG
1321TCACCAAGAG TTCCCTCATA TGGAGTTACC CAGCTGGCTC CTTAACTTTT CCTGTCAGGC
1381CTTTCTTTTA CACTGGCCAC AGATGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1441agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)