Construct: ORF ccsbBroadEn_04871
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007616.1_s300c1, BRDN0000388216
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM3D (131177)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | NM_138805.3 | 100% | 100% | |
| 2 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_005264862.4 | 100% | 100% | |
| 3 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_006712965.3 | 100% | 100% | |
| 4 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533351.2 | 100% | 100% | |
| 5 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_005264863.4 | 99.5% | 99.5% | 120_121insGCA |
| 6 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_005264864.4 | 99.5% | 99.5% | 120_121insGCA |
| 7 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533348.2 | 97.3% | 97.3% | 11_28del |
| 8 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533349.3 | 97.3% | 97.3% | 11_28del |
| 9 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533350.2 | 96.9% | 96.9% | 11_28del;138_139insGCA |
| 10 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533352.2 | 83.7% | 82.5% | (many diffs) |
| 11 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533353.2 | 83.7% | 82.5% | (many diffs) |
| 12 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_006712967.3 | 83.3% | 81.6% | (many diffs) |
| 13 | human | 131177 | FAM3D | FAM3 metabolism regulating ... | XM_011533354.2 | 83.3% | 81.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 738
- ORF length:
- 672
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AGTGTCAGGT GTGCTTCGCC TCCTGGCCCT CATCTTTGCC ATAGTCACGA 121 CATGGATGTT TATTCGAAGC TACATGAGCT TCAGCATGAA AACCATCCGT CTGCCACGCT 181 GGCTGGCAGC CTCGCCCACC AAGGAGATCC AGGTTAAAAA GTACAAGTGT GGCCTCATCA 241 AGCCCTGCCC AGCCAACTAC TTTGCGTTTA AAATCTGCAG TGGGGCCGCC AACGTCGTGG 301 GCCCTACTAT GTGCTTTGAA GACCGCATGA TCATGAGTCC TGTGAAAAAC AATGTGGGCA 361 GAGGCCTAAA CATCGCCCTG GTGAATGGAA CCACGGGAGC TGTGCTGGGA CAGAAGGCAT 421 TTGACATGTA CTCTGGAGAT GTTATGCACC TAGTGAAATT CCTTAAAGAA ATTCCGGGGG 481 GTGCACTGGT GCTGGTGGCC TCCTACGACG ATCCAGGGAC CAAAATGAAC GATGAAAGCA 541 GGAAACTCTT CTCTGACTTG GGGAGTTCCT ACGCAAAACA ACTGGGCTTC CGGGACAGCT 601 GGGTCTTCAT AGGAGCCAAA GACCTCAGGG GTAAAAGCCC CTTTGAGCAG TTCTTAAAGA 661 ACAGCCCAGA CACAAACAAA TACGAGGGAT GGCCAGAGCT GCTGGAGATG GAGGGCTGCA 721 TGCCCCCGAA GCCATTTTAC CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt 781 gcttatcaat ttgttgcaac gaac