Construct: ORF ccsbBroadEn_04971
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009862.1_s300c1, BRDN0000385962
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GLIPR1L2 (144321)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | NM_152436.2 | 100% | 100% | |
| 2 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | NM_001270396.2 | 69.5% | 63.8% | (many diffs) |
| 3 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | XM_017018848.1 | 47.4% | 42% | (many diffs) |
| 4 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | XM_024448850.1 | 47.4% | 42% | (many diffs) |
| 5 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | XM_011537949.2 | 38.8% | 33.6% | (many diffs) |
| 6 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | XM_011537950.2 | 38.8% | 33.6% | (many diffs) |
| 7 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | XM_017018849.1 | 38.8% | 33.6% | (many diffs) |
| 8 | human | 144321 | GLIPR1L2 | GLIPR1 like 2 | NR_072995.2 | 26.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 825
- ORF length:
- 759
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGCCGCAAGG CCCTTCGCCC GGGAGTGGAG GGCCCAGTCC CTACCCCTGG 121 CAGTAGGGGG CGTTTTGAAG CTGCGGCTCT GTGAGCTGTG GCTACTGCTA CTGGGTTCTA 181 GTTTGAACGC CAGATTTTTG CCAGACGAGG AGGACGTAGA CTTTATCAAC GAGTACGTGA 241 ACCTCCACAA TGAGCTGCGG GGCGACGTCA TTCCCCGAGG GTCTAACTTG CGCTTCATGA 301 CTTGGGATGT AGCTTTATCA CGGACTGCTA GAGCATGGGG AAAAAAATGT TTGTTTACGC 361 ATAATATTTA TTTACAAGAT GTACAAATGG TCCATCCTAA ATTTTATGGT ATTGGTGAAA 421 ATATGTGGGT CGGCCCTGAA AATGAATTTA CTGCAAGTAT TGCTATCAGA AGTTGGCATG 481 CAGAGAAGAA AATGTACAAT TTTGAAAATG GCAGTTGCTC TGGAGACTGT TCTAATTATA 541 TTCAGCTTGT TTGGGACCAC TCTTACAAAG TTGGTTGTGC TGTTACTCCA TGTTCAAAAA 601 TTGGACATAT TATACATGCA GCAATTTTCA TATGCAACTA TGCGCCAGGA GGAACACTGA 661 CGAGAAGACC TTATGAACCA GGAATATTTT GTACTCGATG TGGCAGACGT GACAAATGCA 721 CAGATTTTCT ATGCAGTAAG ATAAAGAAAA TAAACATGAA AAAAATGCAT AATGGATTGG 781 ACAAGAAAAA TAAGCGATTG AACACTAGTT TTTTATGGTC ATGTTACCCA ACTTTCTTGT 841 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c