Construct: ORF ccsbBroadEn_04997
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009684.1_s300c1, BRDN0000455534
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- C19orf18 (147685)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 147685 | C19orf18 | chromosome 19 open reading ... | NM_152474.5 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 714
- ORF length:
- 645
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACAAGGTT CAGAGTGGTT TCCTCATTTT GTTTTTGTTT TTAATGGAAT 121 GCCAACTTCA TTTATGCTTG CCGTATGCAG ATGGACTCCA TCCCACTGGA AACATAACAG 181 GCTTACCAGG CAGTAAACGG TCACAACCAC CCAGAAACAT CACCAAAGAG CCCAAAGTGT 241 TCTTTCATAA AACCCAGTTG CCTGGGATTC AAGGGGCTGC CTCGAGATCC ACGGCTGCAT 301 CCCCTACGAA CCCCATGAAA TTCCTGAGGA ATAAAGCAAT AATTCGGCAT AGACCTGCTC 361 TTGTTAAAGT AATTTTAATT TCGAGCGTAG CCTTCAGCAT TGCCCTGATA TGTGGGATGG 421 CAATCTCCTA TATGATATAT CGACTGGCAC AGGCTGAGGA AAGACAACAG CTCGAGTCAC 481 TTTATAAGAA CCTCAGGATA CCGTTATTAG GAGATGAAGA AGAGGGCTCA GAGGACGAGG 541 GTGAGTCCAC GCACCTACTT CCAGAGAACG AAAATGAGCT GGAAAAGTTC ATCCACTCAG 601 TTATTATATC AAAAAGAAGC AAAAATATTA AGAAGAAACT GAAGGAAGAG CAAAACTCAG 661 TAACAGAAAA CAAAACAAAG AATGCGTCAC ATAATGGAAA AATGGAAGAC TTGTTGCCAA 721 CTTTCTTGTA CAAAGTTGGc attataagaa agcattgctt atcaatttgt tgcaacgaac