Construct: ORF ccsbBroadEn_05007
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013381.1_s300c1, BRDN0000456509
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PROSER3 (148137)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 148137 | PROSER3 | proline and serine rich 3 | NM_001039887.3 | 100% | 100% | |
| 2 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526536.3 | 66.8% | 64.1% | (many diffs) |
| 3 | human | 148137 | PROSER3 | proline and serine rich 3 | NM_001367856.1 | 66.2% | 66.2% | 957_1688del |
| 4 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526533.3 | 65.6% | 65.6% | 957_1709del |
| 5 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526534.1 | 65.6% | 65.6% | 957_1709del |
| 6 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526532.1 | 61.7% | 60.5% | (many diffs) |
| 7 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526530.1 | 57.3% | 56.3% | (many diffs) |
| 8 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526528.1 | 56.8% | 55.8% | (many diffs) |
| 9 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526529.3 | 56.7% | 55.7% | (many diffs) |
| 10 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526531.1 | 55.5% | 54.5% | (many diffs) |
| 11 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_024451384.1 | 46.2% | 45.2% | (many diffs) |
| 12 | human | 148137 | PROSER3 | proline and serine rich 3 | XM_011526535.2 | 44.4% | 43% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1509
- ORF length:
- 1440
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACCGCAGC CTGCCAGTTT TCTCCATTCA AGATAGTCCC TTTGGAGATG 121 CGCCCCTGGG TCGAAGCCAC TACTGGCCAT CCCAGAGCCA GACCTGGTGT CCCAAGACCC 181 TGAGCCCATC CAGGTCTCAG AGATCCAGGC TCCCACAAGC TCCCAAGGCT CTAGCCACAG 241 GTCCCAACTC CCCTGAGCTG TTTGAGGAGT CCTGGCCATC CAGTTCAGGG ACCCCCTCCC 301 TGCCCAGCAC CACTGAGGGA CAGATGTGGG CCTCCCCAGC ACCCACCCTG ATTGACAGCG 361 GGGACTCCGT GGTGGCCAAG TATATAAACA GGTTCCGCCA GGCTCAGCCC ACCAGTCGAG 421 AGGAGCGCCA GCCTGCAGGC CCAACCCCAG CTGACTTTTG GTGGCTGCAG TCTGACTCTC 481 CAGACCCCAG CAGTCAAAGT GCAGCAGCAG GAGCCAACAA ACCAGAAGGA AGACCCCATA 541 CAGCTGTCCC TACTGCGGTC AACGTGACCA GTGCATCCCA TGCTGTGGCT CCCCTTCAGG 601 AAATAAAGCA GAACCTCCAC ACATGGAACT CATCCCTGCT GGACCTGGAG ACGCTGAGCC 661 TACAGAGCAG AGCTGCCAGG CTGCTCAAAC GCAGCAAAGC CTCCATCTCC TCCTCCTCCT 721 CCCTCAGCCC CAGCGATGCC AGCACTTCCT CATTCCCCAC CAGCTCTGAT GGCCTCTCTC 781 CCTTCTCGGA GACCTTCATC CCTGACTCCA GCAAGGGCCT TGGCCCCAGG GCACCCGCAT 841 CCCCGGCACC AGCCCAGGCC CAGACCCCCA CCCCTGCTCC AGCCCCAGCC TCCTCCCAAG 901 CACCCCTTCG GCCAGAGGAT GACATTCTGT ACCAGTGGCG GCAGCGGCGG AAGCTTGAAC 961 AGGCTCAGGG AAGCAAGGGT GACAGAGCTT GGGTGCCGCC TCTGACCCCT GCCCTCCGCA 1021 CGTTGGCCGA GTCTCTGAAA GCCAAGGCCT TGCCGCCCGC AGCGGGGTCA GTGATACGGA 1081 AGAGCGAAGC CACTCCTTCC CCTGGAGCCT GCCTGCAGCC CGAGGTCCCA CTCTCTCCAG 1141 CTGAGCAGGC AACCACAGTC AAGGCCTCGC CGCCAGCCTT CCAGGTGGGG TCTCCGGAGG 1201 CCCTGGCCCC GCCCCCGCCC GCTGCTGACC ACGCCCCCTC GGAGGCCCTG CTTGCCCAGG 1261 CCGCCCTGCT GCTGCAGGCT GCAGAAGACT CCGACGGCAG CGAGTTCCAG GACGATCCCG 1321 TGCTGCAGGT GCTAAGAGCC CATAGGGCAG AGCTGAGTCG GCAGAAAAGG GAAGCGGATG 1381 CCCGATTATC GTTCCTGTTG GACCAGGCTG AAGACCTGGG ATCTTGGTCC CCTCCAGCCG 1441 GGTCGCCCCC TAGGTCCCCA AGGAGGCTGC TAAGAAGGGA AGGAGATTCC CTGGAGGCCA 1501 GAAGACTTTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 1561 tttgttgcaa cgaac