Construct: ORF ccsbBroadEn_05069

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001083.1_s300c1, BRDN0000398302
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SLC36A2 (153201)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 153201 SLC36A2 solute carrier family 36 me... NM_181776.3 100% 100%
2 human 153201 SLC36A2 solute carrier family 36 me... XM_006714756.4 93.1% 93.1% 743_744ins99
3 human 153201 SLC36A2 solute carrier family 36 me... XM_005268377.4 81.3% 81.3% 1179_1180ins270
4 human 153201 SLC36A2 solute carrier family 36 me... XM_017009083.2 61.9% 56.1% (many diffs)
5 human 153201 SLC36A2 solute carrier family 36 me... XM_017009084.1 59% 59% 0_1ins594
6 mouse 246049 Slc36a2 solute carrier family 36 (p... XM_006533324.3 78.6% 75.5% (many diffs)
7 mouse 246049 Slc36a2 solute carrier family 36 (p... XM_006533325.3 60.1% 58.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1518
ORF length:
1449
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GTCTGTGACA AAAAGTACTG AGGGTCCCCA GGGAGCCGTT GCCATCAAAT
121TGGACCTTAT GTCGCCTCCT GAAAGTGCCA AGAAGTTGGA GAACAAGGAC TCTACATTCT
181TGGATGAAAG TCCTTCAGAG TCAGCAGGCT TGAAGAAGAC CAAGGGCATA ACAGTGTTCC
241AGGCCTTGAT TCACCTGGTG AAAGGCAACA TGGGCACAGG GATCCTGGGA CTACCCCTCG
301CTGTGAAGAA CGCGGGCATC CTGATGGGCC CACTCAGTCT GCTGGTGATG GGCTTCATTG
361CCTGCCACTG TATGCACATC CTGGTCAAGT GTGCCCAGCG CTTCTGTAAG AGGCTTAACA
421AGCCCTTTAT GGACTATGGG GACACGGTGA TGCATGGACT AGAAGCCAAC CCCAACGCCT
481GGCTCCAGAA TCACGCTCAC TGGGGAAGGC ATATCGTGAG CTTCTTCCTT ATTATCACCC
541AACTTGGCTT CTGCTGTGTG TACATTGTGT TTTTGGCTGA TAATTTAAAA CAGGTAGTGG
601AAGCTGTTAA TAGCACAACC AACAACTGCT ATTCCAATGA GACGGTGATT CTGACCCCCA
661CCATGGACTC GCGACTCTAC ATGCTCTCCT TCCTGCCCTT CCTGGTGCTG CTGGTCCTCA
721TCCGGAACCT CAGGATCTTG ACCATCTTCT CCATGCTGGC CAACATCAGC ATGCTGGTCA
781GCTTGGTCAT CATCATACAG TACATTACCC AGGAAATCCC AGACCCCAGC CGGTTGCCAC
841TGGTAGCAAG CTGGAAGACC TACCCTCTCT TCTTCGGAAC AGCCATTTTT TCTTTTGAAA
901GCATTGGTGT GGTTCTGCCT CTGGAAAACA AGATGAAGAA TGCCCGCCAC TTCCCAGCCA
961TCCTGTCTTT GGGAATGTCC ATCGTCACTT CCCTATACAT TGGCATGGCG GCTCTGGGCT
1021ACCTGCGGTT TGGAGATGAC ATCAAGGCCA GCATAAGCCT TAACCTGCCT AACTGCTGGC
1081TGTACCAGTC TGTCAAGCTT CTCTACATTG CCGGCATCCT GTGCACCTAT GCCCTGCAGT
1141TCTACGTCCC TGCAGAAATC ATCATCCCCT TTGCCATCTC CCGGGTGTCA ACACGCTGGG
1201CACTGCCTCT GGATCTGTCC ATTCGCCTCG TCATGGTCTG CCTGACATGC CTCCTGGCCA
1261TCCTCATCCC CCGCCTGGAC CTGGTCATCT CCCTGGTGGG CTCCGTGAGT GGCACCGCCC
1321TGGCCCTCAT CATCCCACCG CTCCTGGAGG TCACCACGTT CTACTCAGAG GGCATGAGCC
1381CCCTCACCAT CTTCAAGGAC GCCCTGATCA GCATCCTGGG CTTCGTGGGC TTTGTGGTGG
1441GGACCTACCA GGCCCTGGAC GAGCTGCTCA AGTCAGAAGA CTCTCACCCC TTTTCCAACT
1501CCACCACTTT TGTTCGGTTG CCAACTTTCT TGTACAAAGT tggcattata agaaagcatt
1561gcttatcaat ttgttgcaac gaac

Download FASTA (ORF) (Full)