Construct: ORF ccsbBroadEn_05106
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009073.1_s300c1, BRDN0000455388
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLECL1 (160365)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 160365 | CLECL1 | C-type lectin like 1 | NM_172004.3 | 100% | 100% | |
| 2 | human | 160365 | CLECL1 | C-type lectin like 1 | NM_001267701.1 | 97.8% | 97% | (many diffs) |
| 3 | human | 160365 | CLECL1 | C-type lectin like 1 | NM_001253750.1 | 85.6% | 85.3% | (many diffs) |
| 4 | human | 160365 | CLECL1 | C-type lectin like 1 | XM_011520574.2 | 85.6% | 85.3% | (many diffs) |
| 5 | human | 160365 | CLECL1 | C-type lectin like 1 | XM_017018885.1 | 56.2% | 55.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 570
- ORF length:
- 501
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGTTAGTAAT TTCTTCCATG TCATACAAGT ATTCGAGAAA TCTGCTACCT 121 TGATTAGTAA GACTGAACAC ATTGGTTTTG TCATTTATTC ATGGAGGAAG TCCACCACCC 181 ACTTGGGGAG CAGAAGGAAA TTTGCCATCT CAATTTACTT ATCAGAAGTT TCTTTGCAGA 241 AATATGATTG TCCCTTCAGT GGGACATCAT TTGTGGTCTT CTCTCTCTTT TTGATCTGTG 301 CAATGGCTGG AGATGTAGTC TACGCTGACA TCAAAACTGT TCGGACTTCC CCGTTAGAAC 361 TCGCGTTTCC ACTTCAGAGA TCTGTTTCTT TCAACTTTTC TACTGTCCAT AAATCATGTC 421 CTGCCAAAGA CTGGAAGGTG CATAAGGGAA AATGTTACTG GATTGCTGAA ACTAAGAAAT 481 CTTGGAACAA AAGTCAAAAT GACTGTGCCA TAAACAATTC ATATCTCATG GTGATTCAAG 541 ACATTACTGC TATGGTGAGA TTTAACATTT TGCCAACTTT CTTGTACAAA GTTGGcatta 601 taagaaagca ttgcttatca atttgttgca acgaac