Construct: ORF ccsbBroadEn_05128
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015931.1_s300c1, BRDN0000387887
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TOR1AIP2 (163590)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001199260.2 | 100% | 100% | |
| 2 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349934.2 | 100% | 100% | |
| 3 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349935.2 | 100% | 100% | |
| 4 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349936.2 | 100% | 100% | |
| 5 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_001349937.2 | 100% | 100% | |
| 6 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | NM_145034.5 | 100% | 100% | |
| 7 | human | 163590 | TOR1AIP2 | torsin 1A interacting prote... | XM_017000476.2 | 56.1% | 56.1% | 0_1ins618 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1479
- ORF length:
- 1410
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCCGACAGT GGACTTAGGG AACCTCAAGA GGACTCTCAA AAGGATTTGG 121 AAAATGATCC ATCAGTAAAT TCTCAGGCGC AGGAGACCAC AATCATAGCA AGTAATGCTG 181 AAGAAGCTGA GATCCTACAC TCTGCCTGTG GTCTTAGCAA AGACCACCAA GAGGTAGAGA 241 CAGAAGGTCC AGAAAGTGCA GATACAGGTG ATAAATCAGA AAGTCCAGAT GAAGCAAATG 301 TGGGGAAACA TCCAAAGGAT AAAACAGAAG ATGAGAACAA GCAGAGTTTT CTGGATGGCG 361 GAAAAGGGCA TCACCTCCCT TCAGAAAATC TGGGTAAAGA ACCCTTGGAT CCAGATCCCA 421 GCCATTCTCC AAGTGACAAG GTAGGAAGAG CAGATGCACA CTTAGGGAGC AGCTCTGTGG 481 CCCTCCCTAA GGAAGCGAGT GACGGAACTG GAGCATCTCA GGAACCACCT ACTACAGACT 541 CCCAGGAGGC CCAGAGTCCT GGTCATTCCA GTGCAGGGCA AGAGGGTGAG GATACACTGA 601 GGAGGCGACT GCTGGCCCCA GAGGCTGGAA GTCATCCACA ACAAACACAA AAATTGGAAG 661 AAATTAAAGA GAATGCACAG GACACCATGA GACAGATTAA TAAAAAGGGT TTTTGGAGCT 721 ATGGCCCTGT GATTCTTGTC GTCCTGGTTG TGGCTGTTGT GGCAAGTTCT GTGAATAGCT 781 ACTATTCCTC TCCAGCCCAG CAAGTGCCCA AAAATCCAGC TTTGGAGGCC TTTTTGGCCC 841 AGTTTAGCCA ATTGGAAGAT AAATTTCCAG GCCAGAGTTC CTTCCTGTGG CAGAGAGGAC 901 GGAAGTTTCT CCAGAAGCAC CTCAATGCTT CCAACCCCAC TGAGCCAGCC ACCATCATAT 961 TTACAGCAGC TCGGGAGGGA AGAGAGACCC TGAAGTGCCT GAGCCACCAT GTTGCAGATG 1021 CCTACACCTC TTCCCAGAAA GTCTCTCCCA TTCAGATTGA TGGGGCTGGA AGGACCTGGC 1081 AGGACAGTGA CACGGTCAAG CTGTTGGTTG ACCTGGAGCT GAGCTATGGG TTTGAGAATG 1141 GCCAGAAGGC TGCTGTGGTA CACCACTTCG AATCCTTCCC TGCCGGCTCC ACTTTGATCT 1201 TCTATAAGTA TTGTGATCAT GAGAATGCTG CCTTTAAAGA TGTGGCCCTG GTCCTGACTG 1261 TTCTGCTAGA GGAGGAAACA TTAGAAGCAA GTGTAGGCCC AAGGGAAACG GAAGAAAAAG 1321 TGAGAGACTT ACTCTGGGCC AAGTTTACCA ACTCTGACAC TCCCACCTCC TTCAACCACA 1381 TGGACTCAGA CAAATTGAGT GGGCTGTGGA GCCGAATTTC ACACCTGGTA CTGCCAGTCC 1441 AGCCAGTGAG TAGCATAGAA GAACAGGGGT GCCTTTTCTT GCCAACTTTC TTGTACAAAG 1501 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac