Construct: ORF ccsbBroadEn_05149
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007130.1_s300c1, BRDN0000392142
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TMEM252 (169693)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 169693 | TMEM252 | transmembrane protein 252 | NM_153237.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 576
- ORF length:
- 510
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCA GAACAGAACT GGCCTCATTC TCTGTGCTCT TGCCCTCCTG ATGGGTTTCC 121 TGATGGTCTG CCTGGGGGCC TTCTTCATTT CCTGGGGCTC CATATTCGAC TGTCAGGGGA 181 GCCTGATTGC GGCCTATTTG CTTCTGCCTC TGGGGTTTGT GATCCTTCTG AGTGGAATTT 241 TCTGGAGCAA CTATCGCCAG GTGACTGAAA GCAAAGGAGT GTTGAGGCAC ATGCTCCGAC 301 AACACCTTGC TCATGGGGCC CTGCCCGTGG CCACAGTAGA CAGGCCAGAC TTTTACCCTC 361 CAGCTTATGA AGAGAGCCTT GAGGTGGAAA AGCAGAGCTG TCCTGCAGAG AGAGAGGCCT 421 CTGGCATTCC TCCACCTCTA TATACAGAGA CGGGCCTGGA ATTCCAGGAT GGAAATGACT 481 CCCACCCAGA GGCCCCACCA TCTTATAGAG AGTCCATAGC CGGCCTGGTG GTGACAGCAA 541 TCTCAGAGGA CGCCCAGAGG CGAGGCCAAG AGTGCTGCCC AACTTTCTTG TACAAAGTtg 601 gcattataag aaagcattgc ttatcaattt gttgcaacga ac