Construct: ORF ccsbBroadEn_05215
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008107.1_s300c1, BRDN0000387291
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAGE2 (203569)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 203569 | PAGE2 | PAGE family member 2 | NM_207339.4 | 99.6% | 100% | 279T>G |
| 2 | human | 203569 | PAGE2 | PAGE family member 2 | XM_017029353.1 | 99.6% | 100% | 279T>G |
| 3 | human | 389860 | PAGE2B | PAGE family member 2B | NM_001015038.3 | 96.3% | 93.6% | (many diffs) |
| 4 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530787.2 | 96.3% | 93.6% | (many diffs) |
| 5 | human | 389860 | PAGE2B | PAGE family member 2B | XM_017029513.1 | 96.3% | 93.6% | (many diffs) |
| 6 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530786.3 | 92.2% | 89.6% | (many diffs) |
| 7 | human | 90737 | PAGE5 | PAGE family member 5 | NM_001013435.3 | 92.1% | 81.9% | (many diffs) |
| 8 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530785.2 | 79.8% | 77.6% | (many diffs) |
| 9 | human | 90737 | PAGE5 | PAGE family member 5 | NM_130467.5 | 78.1% | 69.4% | (many diffs) |
| 10 | human | 100421746 | LOC100421746 | PAGE family member 5 pseudo... | NR_130179.1 | 59.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG TGAGCTTCTA AGAGCAAGAT CCCAATCCTC AGAAAGAGGA AATGACCAAG 121 AGTCTTCCCA GCCGGTTGGA TCTGTGATTG TCCAGGAGCC CACTGAGGAA AAACGTCAAG 181 AAGAGGAACC ACCAACTGAT AATCAGGGTA TTGCACCTAG TGGGGAGATT GAAAATCAAG 241 CAGTGCCTGC TTTTCAAGGG CCTGACATGG AAGCTTTTCA ACAGGAACTG GCTCTGCTTA 301 AGATAGAGGA TGAGCCTGGA GATGGTCCTG ATGTCAGGGA GGGGATTATG CCCACTTTTG 361 ATCTCACTAA AGTGCTGGAA GCAGGTGATG CGCAACCATA CCCAACTTTC TTGTACAAAG 421 Ttggcattat aagaaagcat tgcttatcaa tttgttgcaa cgaac