Construct: ORF ccsbBroadEn_05219
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006906.1_s300c1, BRDN0000455817
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR4C6 (219432)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 219432 | OR4C6 | olfactory receptor family 4... | NM_001004704.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 996
- ORF length:
- 927
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAAATCAA AACAATGTGA CTGAATTCAT TCTTCTGGGT CTCACAGAGA 121 ACCTGGAGCT GTGGAAAATA TTTTCTGCTG TGTTTCTTGT CATGTATGTA GCCACAGTGC 181 TGGAAAATCT ACTTATTGTG GTAACTATTA TCACAAGTCA GAGTCTGAGG TCACCTATGT 241 ATTTTTTTCT TACCTTCTTG TCCCTTTTGG ATGTCATGTT CTCATCTGTC GTTGCCCCCA 301 AGGTGATTGT AGACACCCTC TCCAAGAGCA CTACCATCTC TCTCAAAGGC TGCCTCACCC 361 AGCTGTTTGT GGAGCATTTC TTTGGTGGTG TGGGGATCAT CCTCCTCACT GTGATGGCCT 421 ATGACCGCTA CGTGGCCATC TGTAAGCCCC TGCACTACAC GATCATCATG AGTCCACGGG 481 TGTGCTGCCT AATGGTAGGA GGGGCTTGGG TGGGGGGATT TATGCACGCA ATGATACAAC 541 TTCTCTTCAT GTATCAAATA CCCTTCTGTG GTCCTAATAT CATAGATCAC TTTATATGTG 601 ATTTGTTTCA GTTGTTGACA CTTGCCTGCA CGGACACCCA CATCCTGGGC CTCTTAGTTA 661 CCCTCAACAG TGGGATGATG TGTGTGGCCA TCTTTCTTAT CTTAATTGCG TCCTACACGG 721 TCATCCTATG CTCCCTGAAG TCTTACAGCT CTAAAGGGCG GCACAAAGCC CTCTCTACCT 781 GCAGCTCCCA CCTCACGGTG GTTGTATTGT TCTTTGTCCC CTGTATTTTC TTGTACATGA 841 GGCCTGTGGT CACTCACCCC ATAGACAAGG CAATGGCTGT GTCAGACTCA ATCATCACAC 901 CCATGTTAAA TCCCTTGATC TATACACTGA GGAATGCAGA GGTGAAAAGT GCCATGAAGA 961 AACTCTGGAT GAAATGGGAG GCTTTGGCTG GGAAATTGCC AACTTTCTTG TACAAAGTTG 1021 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac