Construct: ORF ccsbBroadEn_05245
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016373.1_s300c1, BRDN0000457183
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF438 (220929)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143766.1 | 100% | 100% | |
| 2 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143767.1 | 100% | 100% | |
| 3 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143768.1 | 100% | 100% | |
| 4 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_182755.2 | 100% | 100% | |
| 5 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_006717396.3 | 100% | 100% | |
| 6 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519371.3 | 100% | 100% | |
| 7 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519372.2 | 100% | 100% | |
| 8 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519373.3 | 100% | 100% | |
| 9 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519374.2 | 100% | 100% | |
| 10 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015864.2 | 100% | 100% | |
| 11 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015865.2 | 100% | 100% | |
| 12 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015866.1 | 100% | 100% | |
| 13 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015867.2 | 100% | 100% | |
| 14 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015868.1 | 100% | 100% | |
| 15 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015869.2 | 100% | 100% | |
| 16 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015870.2 | 100% | 100% | |
| 17 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015871.2 | 100% | 100% | |
| 18 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015872.2 | 100% | 100% | |
| 19 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447868.1 | 100% | 100% | |
| 20 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447869.1 | 100% | 100% | |
| 21 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447870.1 | 100% | 100% | |
| 22 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447871.1 | 100% | 100% | |
| 23 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447872.1 | 100% | 100% | |
| 24 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447873.1 | 100% | 100% | |
| 25 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015863.2 | 98.6% | 98.6% | 1_33del |
| 26 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143770.1 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 27 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143771.1 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 28 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_006717398.3 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 29 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_006717399.3 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 30 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519376.2 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 31 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_011519377.2 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 32 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015873.1 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 33 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015874.2 | 98.6% | 98.4% | 0_1ins31;3delG;6_7delTAinsAG |
| 34 | human | 220929 | ZNF438 | zinc finger protein 438 | NM_001143769.1 | 94% | 94% | 0_1ins147 |
| 35 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447875.1 | 94% | 94% | 0_1ins147 |
| 36 | human | 220929 | ZNF438 | zinc finger protein 438 | NR_026560.1 | 54.6% | 1_296del;476_477ins778;2003_2341del | |
| 37 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015875.1 | 47.3% | 47.3% | 0_1ins1308 |
| 38 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015876.1 | 47.3% | 47.3% | 0_1ins1308 |
| 39 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015877.1 | 47.3% | 47.3% | 0_1ins1308 |
| 40 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015878.1 | 47.3% | 47.3% | 0_1ins1308 |
| 41 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015879.1 | 47.3% | 47.3% | 0_1ins1308 |
| 42 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015880.2 | 47.3% | 47.3% | 0_1ins1308 |
| 43 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015881.1 | 47.3% | 47.3% | 0_1ins1308 |
| 44 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_017015882.1 | 47.3% | 47.3% | 0_1ins1308 |
| 45 | human | 220929 | ZNF438 | zinc finger protein 438 | XM_024447876.1 | 47.3% | 47.3% | 0_1ins1308 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2553
- ORF length:
- 2484
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCAGAATTCT GTATCAGTAC CACCAAAAGA TGAAGGTGAA TCAAACATCC 121 CTTCTGGAAC AATACAGAGT AGGAAAGGTT TGCAGAATAA GAGTCAGTTT AGGACCATTG 181 CACCAAAAAT TGTGCCCAAA GTCCTAACGT CCAGAATGCT GCCATGTCAT TCACCATCAC 241 GCTCTGATCA GGTGAATCTG GGACCCTCCA TCAACTCCAA GCTGCTGGGG ATGTCCACCC 301 AGAACTATGC CCTGATGCAG GTTGCTGGCC AGGAGGGGAC ATTTTCTCTT GTTGCTCTGC 361 CACATGTTGC CTCAGCTCAG CCAATTCAGA AACCCAGAAT GTCCCTACCT GAAAACCTGA 421 AACTTCCTAT TCCTAGATAT CAACCCCCTA GAAATAGCAA AGCATCAAGA AAGAAACCCA 481 TCCTGATCTT TCCTAAGAGT GGCTGTAGCA AAGCTCCTGC CCAAACCCAA ATGTGTCCTC 541 AGATGTCCCC TTCCCCACCT CACCACCCTG AACTCCTGTA CAAACCCAGT CCATTTGAGG 601 AAGTACCATC ACTAGAGCAA GCCCCAGCCA GCATTAGCAC AGCTGCGCTG ACCAATGGAA 661 GTGACCATGG GGACTTGAGA CCACCAGTGA CCAACACCCA TGGCAGTCTG AACCCTCCTG 721 CTACCCCAGC ATCATCCACA CCAGAGGAGC CTGCCAAGCA GGACCTCACA GCTCTTTCAG 781 GGAAAGCACA CTTTGTAAGC AAGATAACAT CTAGTAAACC TTCTGCTGTT GCCAGTGAAA 841 AATTTAAAGA ACAAGTTGAT CTTGCAAAAA CCATGACCAA TTTATCACCA ACCATTCTTG 901 GCAATGCAGT TCAGTTGATC TCTTCAGTCC CCAAAGGGAA ACTGCCAATC CCACCCTACT 961 CAAGAATGAA GACAATGGAG GTTTACAAAA TCAAATCAGA TGCTAACATT GCAGGTTTTT 1021 CTTTACCAGG ACCTAAGGCC GACTGTGATA AGATACCCTC CACCACAGAA GGCTTTAATG 1081 CAGCCACCAA GGTGGCAAGC AGGCTACCTG TTCCACAAGT GTCACAGCAG AGTGCCTGTG 1141 AAAGTGCCTT TTGTCCACCC ACCAAACTTG ATCTTAACCA CAAAACAAAA CTGAACAGTG 1201 GAGCAGCAAA GAGAAAAGGA AGAAAACGGA AGGTACCAGA TGAAATTTTG GCATTTCAGG 1261 GAAAAAGGAG GAAATATATC ATTAATAAGT GTAGAGATGG TAAAGAAAGA GTAAAAAATG 1321 ATCCCCAAGA ATTCAGAGAC CAAAAGCTGG GGACCCTGAA AAAATACCGT AGCATTATGC 1381 CCAAACCTAT CATGGTCATA CCCACTTTGG CCTCCCTGGC TTCTCCAACT ACACTACAGT 1441 CCCAGATGCT TGGGGGCCTA GGACAGGATG TTTTGTTAAA TAATTCACTC ACTCCTAAAT 1501 ATCTTGGCTG TAAGCAAGAC AACAGCTCTT CCCCTAAGCC CAGCTCCGTG TTCAGAAATG 1561 GATTCTCTGG CATTAAGAAG CCTTGGCACA GATGTCACGT CTGCAACCAC CACTTCCAGT 1621 TCAAACAGCA CCTTCGAGAC CACATGAATA CACACACCAA CAGACGCCCT TACAGTTGTC 1681 GGATTTGTCG CAAGTCCTAT GTACGTCCTG GCAGCCTGAG CACACACATG AAACTTCATC 1741 ATGGTGAGAA CCGTCTGAAG AAACTCATGT GTTGTGAGTT TTGTGCAAAA GTGTTTGGCC 1801 ACATCCGAGT CTATTTTGGC CATCTGAAAG AAGTGCATAG GGTTGTGATC AGCACTGAGC 1861 CTGCGCCCAG TGAACTGCAG CCAGGAGACA TACCAAAGAA CAGAGACATG AGTGTGCGAG 1921 GCATGGAGGG ATCATTGGAG AGGGAAAACA AGTCCAACCT GGAAGAAGAC TTCCTTCTAA 1981 ACCAGGCAGA CGAAGTCAAA TTACAAATCA AATGTGGTCG TTGTCAGATT ACTGCTCAGT 2041 CTTTTGCGGA AATAAAATTT CATTTACTTG ATGTTCATGG AGAGGAAATT GAGGGCAGGC 2101 TACAAGAAGG GACCTTCCCA GGAAGCAAGG GGACTCAGGA AGAGTTGGTG CAGCACGCTA 2161 GCCCCGACTG GAAAAGGCAT CCTGAGAGAG GGAAGCCGGA GAAGGTTCAT TCCTCCTCCG 2221 AGGAATCACA TGCATGTCCA AGACTGAAAA GGCAGCTCCA CCTTCATCAG AATGGCGTGG 2281 AAATGCTCAT GGAAAATGAA GGACCCCAGT CAGGAACCAA CAAGCCAAGG GAAACCTGCC 2341 AGGGCCCTGA GTGTCCTGGC CTCCACACGT TTCTCTTGTG GTCCCATTCA GGCTTTAACT 2401 GCCTGCTTTG TGCAGAGATG CTGGGACGGA AAGAGGACCT CCTCCACCAC TGGAAGCACC 2461 AGCATAACTG TGAGGACCCT TCCAAACTGT GGGCTATTTT AAATACGGTC TCCAACCAGG 2521 GAGTGATCGA ACTTTCCAGT GAAGCTGAGA AATTGCCAAC TTTCTTGTAC AAAGTTGGca 2581 ttataagaaa gcattgctta tcaatttgtt gcaacgaac