Construct: ORF ccsbBroadEn_05304
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004020.1_s300c1, BRDN0000398087
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MORN5 (254956)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 254956 | MORN5 | MORN repeat containing 5 | NM_198469.4 | 100% | 100% | |
| 2 | human | 254956 | MORN5 | MORN repeat containing 5 | NM_001286828.1 | 59.6% | 36.9% | 193_194ins112;288_289ins83 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 552
- ORF length:
- 483
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGTACACA GGGAGCAAAT ATATCGGGGA ATATGTAGAT GGGAGGATGG 121 AGGGCAAAGC CAAGTACATC CTCCCTACCG AAACAATATA TGTTGGGGAA ATGAAGGATG 181 GCATGTTTCA CGGCGAGGGA ACCCTGTACT TCCCCAGCGG AAGCCAATAC GACGCCATTT 241 GGGAAAACGG ATTGGCCATA AAGGGCACAT ATACGTTCTC AGATGGGCTG CACTATGATG 301 AGAAAAACTG GCATTACTGC GACGGCTATG ATCGGAGGTT TTACACAGAG ATCCTCAATG 361 GCTTGAAGCC TGCAGGTATG GCTCAACTCA CCAATATGGA CCCACCTAGA AAAATCCCCA 421 AGGGCTATTA CGATTGTGGA GACGGCTTCT ATAACCCAGT CACGAGGGTA GTCAAGGACT 481 ATAGGAACCG CTTTCTAAGA AACGCAGATG ATGACGAGCA TGAGTGGATC ACCCGTACCT 541 GTCGAAAGGG CTTGCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 601 caatttgttg caacgaac