Construct: ORF ccsbBroadEn_05308
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008115.1_s300c1, BRDN0000386471
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TCP11L2 (255394)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 255394 | TCP11L2 | t-complex 11 like 2 | NM_152772.3 | 100% | 100% | |
| 2 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_005268767.5 | 100% | 100% | |
| 3 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_005268768.4 | 100% | 100% | |
| 4 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_011538129.3 | 100% | 100% | |
| 5 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_011538130.2 | 100% | 100% | |
| 6 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019127.2 | 100% | 100% | |
| 7 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019129.2 | 100% | 100% | |
| 8 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019130.2 | 100% | 100% | |
| 9 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019131.1 | 100% | 100% | |
| 10 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_011538131.3 | 87.4% | 87.4% | 0_1ins195 |
| 11 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019132.2 | 87.4% | 87.4% | 0_1ins195 |
| 12 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_017019133.2 | 87.4% | 87.4% | 0_1ins195 |
| 13 | human | 255394 | TCP11L2 | t-complex 11 like 2 | XM_011538132.3 | 61.9% | 61.8% | 960delG;963_964insA;966_967ins591 |
| 14 | human | 255394 | TCP11L2 | t-complex 11 like 2 | NM_001286262.2 | 50.8% | 49.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1623
- ORF length:
- 1557
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCC CTTCAATGGC GAGAAGCAGT GTGTGGGAGA GGACCAGCCA AGCGATTCTG 121 ATTCTTCCCG GTTTTCCGAA AGCATGGCTT CGCTCAGTGA CTATGAATGC TCCAGGCAGA 181 GCTTTGCAAG TGACTCCTCC AGCAAATCCA GCTCTCCTGC TTCAACAAGC CCTCCAAGGG 241 TTGTAACATT TGATGAAGTG ATGGCTACAG CAAGGAACTT ATCAAACTTG ACTCTTGCTC 301 ATGAGATTGC TGTAAATGAG AACTTTCAAT TGAAACAAGA GGCTCTCCCA GAAAAGAGTT 361 TGGCTGGTCG AGTGAAGCAC ATTGTTCACC AGGCCTTCTG GGACGTCTTG GATTCAGAAC 421 TAAATGCTGA CCCTCCTGAG TTTGAACATG CCATCAAACT GTTTGAAGAA ATCAGAGAGA 481 TTCTTCTCTC TTTTCTCACT CCCGGTGGCA ACCGGCTTCG CAACCAAATC TGTGAAGTTT 541 TGGACACAGA CCTCATTAGG CAGCAGGCTG AGCACAGTGC TGTTGACATC CAAGGCCTGG 601 CCAACTATGT CATCAGTACG ATGGGAAAGC TGTGTGCTCC CGTGCGAGAT AATGATATCA 661 GAGAGTTAAA GGCTACTGGC AACATCGTGG AGGTGCTGAG ACAAATATTC CATGTCCTGG 721 ACCTCATGCA AATGGACATG GCCAATTTTA CAATTATGAG TCTCAGACCG CACCTTCAAC 781 GCCAGTTGGT GGAATATGAG AGAACCAAGT TCCAGGAAAT TTTGGAAGAA ACTCCAAGTG 841 CTCTTGATCA GACTACAGAA TGGATAAAAG AATCTGTAAA TGAAGAATTA TTTTCTCTTT 901 CTGAGAGTGC TTTAACTCCT GGGGCCGAAA ATACCTCCAA GCCAAGCCTG AGCCCTACTT 961 TGGTGCTAAA TAATAGTTAC TTGAAACTGT TACAGTGGGA TTATCAGAAA AAAGAATTAC 1021 CAGAGACACT TATGACAGAT GGAGCACGTC TTCAGGAACT AACAGAAAAG CTGAATCAAT 1081 TGAAAATTAT TGCCTGCCTG TCCCTAATTA CCAACAACAT GGTGGGTGCT ATTACAGGAG 1141 GCCTGCCTGA GCTTGCAAGC AGGTTAACAA GGATTTCAGC TGTTCTACTT GAAGGCATGA 1201 ACAAAGAGAC CTTTAACTTG AAGGAAGTCC TGAATTCTAT TGGTATTCAG ACTTGTGTTG 1261 AGGTTAACAA GACCCTGATG GAAAGAGGTT TACCCACTTT AAATGCTGAG ATTCAAGCTA 1321 ATCTTATAGG TCAATTTTCA AGCATTGAAG AGGAGGACAA TCCTATCTGG TCCTTGATTG 1381 ATAAACGAAT TAAGCTTTAC ATGAGAAGGC TACTTTGTCT TCCAAGCCCT CAAAAATGCA 1441 TGCCTCCTAT GCCAGGAGGC CTAGCTGTCA TTCAGCAGGA GCTAGAAGCC CTAGGCTCTC 1501 AATATGCAAA CATTGTGAAT CTCAACAAAC AAGTGTATGG ACCATTTTAT GCAAATATAC 1561 TTCGAAAGCT GCTCTTCAAT GAGGAAGCCA TGGGGAAGGT AGATGCTTCA CCTCCTACTA 1621 ACTACCCAAC TTTCTTGTAC AAAGTtggca ttataagaaa gcattgctta tcaatttgtt 1681 gcaacgaac