Construct: ORF ccsbBroadEn_05335
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000215.1_s300c1, BRDN0000397437
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- SELENOH (280636)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 280636 | SELENOH | selenoprotein H | NM_001321335.1 | 100% | 100% | |
| 2 | human | 280636 | SELENOH | selenoprotein H | NM_170746.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 195
- ORF length:
- 129
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC TCCCCGCGGG AGGAAGCGTA AGGCTGAGGC CGCGGTGGTC GCCGTAGCCG 121 AGAAGCGAGA GAAGCTGGCG AACGGCGGGG AGGGAATGGA GGAGGCGACC GTTGTTATCG 181 AGCATTGCAC TAGCTGACGC GTCTATGGGC GCAACGCCGC GGCCCTGAGC CAGGCGCTGC 241 GCCTGGAGGC CCCAGAGCTT CCAGTAAAGG TGAACCCGAC GAAGCCCCGG AGGGGCAGCT 301 TCGAGGTGAC GCTGCTGCGC CCGGACGGCA GCAGTGCGGA GCTCTGGACT GGGATTAAGA 361 AGGGGCCCCC ACGCAAACTC AAATTCCCTG AGCCTCAAGA GGTGGTGGAA GAGTTGAAGA 421 AGTACCTGTC GTACCCAACT TTCTTGTACA AAGTtggcat tataagaaag cattgcttat 481 caatttgttg caacgaac