Construct: ORF ccsbBroadEn_05383
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018535.1_s300c1, BRDN0000386808
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OR2L13 (284521)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 284521 | OR2L13 | olfactory receptor family 2... | NM_001304535.1 | 100% | 100% | |
| 2 | human | 284521 | OR2L13 | olfactory receptor family 2... | NM_175911.3 | 100% | 100% | |
| 3 | human | 284521 | OR2L13 | olfactory receptor family 2... | XM_011544169.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1002
- ORF length:
- 936
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GAAATGGAAT CACACTTCAA ATGATTTCAT TTTGTTGGGT CTGCTTCCCC 121 CAAATCAAAC TGGAATATTT CTCTTGTGCC TTATCATCCT CATATTCTTT CTGGCCTCGG 181 TGGGTAACTC GGCCATGATT CACCTCATCC ACGTGGATCC TCGTCTCCAC ACACCGATGT 241 ACTTTCTTCT CAGCCAGCTC TCCCTTATGG ACCTGATGTA CATCTCCACC ACCGTCCCCA 301 AGATGGCGTA CAACTTCCTG TCCGGCCAGA AAGGCATCTC CTTCCTGGGA TGTGGTGTGC 361 AAAGCTTCTT CTTCCTGACC ATGGCGTGTT CTGAAGGCTT ACTCCTGACC TCCATGGCCT 421 ACGACCGTTA TTTGGCCATC TGCCACTCTC TCTATTATCC TATCCGCATG AGTAAAATGA 481 TGTGTGTGAA GATGATTGGA GGCTCTTGGA CACTGGGGTC CATCAACTCC TTGGCACACA 541 CAGTCTTTGC CCTTCATATT CCCTACTGCA GGTCTAGGGC TATTGACCAT TTCTTCTGCG 601 ATGTCCCAGC CATGTTGCTT CTTGCCTGTA CAGATACTTG GGTCTATGAA TATATGGTTT 661 TTGTAAGTAC AAGCCTCTTT CTCCTTTTCC CTTTCATTGG CATCACTTCT TCCTGTGGCC 721 GAGTCCTATT TGCTGTCTAT CATATGCACT CAAAGGAGGG GAGAAAAAAG GCCTTCACCA 781 CCATTTCAAC ACATTTAACT GTAGTGATCT TTTACTATGC ACCTTTTGTC TACACCTATC 841 TTCGGCCCAG GAATCTCCGC TCACCAGCTG AAGACAAGAT CCTGGCAGTC TTCTACACCA 901 TCCTTACCCC CATGCTCAAT CCCATTATCT ACAGCCTGAG GAATAAGGAA GTCCTGGGGG 961 CTATGAGGAG AGTGTTTGGG ATATTCTCTT TCCTGAAAGA ATACCCAACT TTCTTGTACA 1021 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac