Construct: ORF ccsbBroadEn_05388
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008658.1_s300c1, BRDN0000456894
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STARD7-AS1 (285033)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285033 | STARD7-AS1 | STARD7 antisense RNA 1 | NR_046322.1 | 14.6% | 1_1370del;1734_2484del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 432
- ORF length:
- 363
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAAAAGTGTT TACAATATTC GTCCTCTTAC TCCTCAGTAT GTGAGACTGT 121 TCCTCGTAGC AGGTAATTTC TTCCGAATTC AAAAACTCCT CATGGAAGCA TCTGTTTTTG 181 TCATCAAGGA GGGGGCTGTA TGTGGAATTG CAAGGCCAAA GACATCTCGG GTCAACTCTT 241 CTCAGGACCA GATCCAAGTC GCCAGTGAGA ACACACATTC AGGCAGCCTC CACCAGCGCC 301 CTGCCTCAGG AGCGAGGCTC CCTGCTTCAT GTGGGCAAGA GCTGCCCTTG TTTTCCCAGC 361 GGGCAGTTGG GGGTCTGGAG CCTAGGAAGC AAAGTGAAGC ACACACTCCT GCTTCCTTCC 421 TTCCCTGCAG TTTGCCAACT TTCTTGTACA AAGTTGGcat tataagaaag cattgcttat 481 caatttgttg caacgaac