Construct: ORF ccsbBroadEn_05406
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004528.1_s300c1, BRDN0000388025
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SREK1IP1 (285672)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285672 | SREK1IP1 | SREK1 interacting protein 1 | NM_173829.4 | 100% | 100% | |
| 2 | human | 285672 | SREK1IP1 | SREK1 interacting protein 1 | XM_011543344.3 | 89.6% | 89% | 13_14ins48 |
| 3 | mouse | 67288 | Srek1ip1 | splicing regulatory glutami... | NM_026075.3 | 85.8% | 89.6% | (many diffs) |
| 4 | mouse | 67288 | Srek1ip1 | splicing regulatory glutami... | NR_135272.1 | 20.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 534
- ORF length:
- 465
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCAGTCCCA GGTTGCAACA AGGACAGTGT CAGAGCAGGC TGTAAAAAAT 121 GTGGCTACCC TGGTCACCTG ACTTTTGAAT GCCGCAATTT TCTCCGAGTA GACCCTAAAA 181 GGGACATAGT TTTGGATGTC AGCAGTACAA GTAGTGAAGA TAGCGATGAA GAGAATGAAG 241 AACTGAATAA ATTGCAGGCA TTACAGGAAA AAAGAATAAA TGAAGAAGAG GAAAAGAAGA 301 AAGAAAAAAG CAAAGAAAAA ATCAAATTGA AAAAAAAAAG GAAAAGGTCT TACTCATCCA 361 GTTCCACTGA AGAGGACACT TCAAAACAAA AGAAACAAAA ATATCAGAAG AAAGAAAAGA 421 AAAAAGAAAA AAAGAGTAAA TCAAAAAAAG GGAAACATCA CAAAAAGGAA AAAAAGAAGA 481 GAAAAAAGGA AAAGCATTCT TCTACACCTA ATAGTTCTGA ATTCTCCAGA AAGTTGCCAA 541 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac