Construct: ORF ccsbBroadEn_05410
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003676.1_s300c1, BRDN0000387606
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CNPY1 (285888)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001103176.2 | 100% | 100% | |
| 2 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369814.1 | 100% | 100% | |
| 3 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369815.1 | 100% | 100% | |
| 4 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369816.1 | 100% | 100% | |
| 5 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369820.1 | 100% | 100% | |
| 6 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369821.1 | 100% | 100% | |
| 7 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369813.1 | 50.8% | 50.8% | 1_267del |
| 8 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NM_001369818.1 | 40.3% | 40.3% | 1_408del |
| 9 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163160.1 | 10.7% | 1_498del;775_2571del | |
| 10 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163158.1 | 9.9% | (many diffs) | |
| 11 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163159.1 | 9.4% | (many diffs) | |
| 12 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163157.1 | 9.3% | (many diffs) | |
| 13 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163161.1 | 8.7% | (many diffs) | |
| 14 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163164.1 | 8.6% | 1_1125del;1402_3198del | |
| 15 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163167.1 | 8.6% | (many diffs) | |
| 16 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163163.1 | 8.2% | 1_1125del;1402_3343del | |
| 17 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163166.1 | 8.2% | (many diffs) | |
| 18 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163162.1 | 7.2% | (many diffs) | |
| 19 | human | 285888 | CNPY1 | canopy FGF signaling regula... | NR_163165.1 | 6.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 345
- ORF length:
- 276
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcaccAT GAACGACTAC AAGCTTGAGG AAGACCCTGT GACGAAGGAG AGAACTTTCA 121 AGAGATTCGC TCCTAGGAAA GGAGACAAAA TATACCAAGA ATTTAAAAAA TTGTATTTTT 181 ATTCTGATGC TTACAGACCT TTGAAATTTG CGTGTGAAAC TATAATAGAA GAGTATGAAG 241 ATGAAATATC CTCACTTATC GCCCAGGAGA CACACTATCT AGCTGACAAG CTGTGCAGTG 301 AAAAATCAGA TCTGTGTGAA ACTTCTGCTA ATCATACTGA GCTCTTGCCA ACTTTNTTGT 361 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c