Transcript: Human NM_001369813.1

Homo sapiens canopy FGF signaling regulator 1 (CNPY1), transcript variant 7, mRNA.

Source:
NCBI, updated 2019-04-19
Taxon:
Homo sapiens (human)
Gene:
CNPY1 (285888)
Length:
2545
CDS:
61..606

Additional Resources:

NCBI RefSeq record:
NM_001369813.1
NBCI Gene record:
CNPY1 (285888)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001369813.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000136753 GACGAAGGAGAGAACTTTCAA pLKO.1 360 CDS 100% 5.625 7.875 N CNPY1 n/a
2 TRCN0000137554 CAGGAGACACACTATCTAGCT pLKO.1 523 CDS 100% 2.640 3.696 N CNPY1 n/a
3 TRCN0000134990 CCCACCTAAACTCTGATTAAA pLKO.1 1828 3UTR 100% 15.000 12.000 N CNPY1 n/a
4 TRCN0000136892 CGAAGGAGAGAACTTTCAAGA pLKO.1 362 CDS 100% 4.950 3.960 N CNPY1 n/a
5 TRCN0000136907 CTTTCAAGAGATTCGCTCCTA pLKO.1 374 CDS 100% 2.640 2.112 N CNPY1 n/a
6 TRCN0000134112 CAAAGGTCAATGTCTGCATTT pLKO.1 649 3UTR 100% 10.800 7.560 N CNPY1 n/a
7 TRCN0000250879 TGGGATCCTTCCGAATCAATC pLKO_005 221 CDS 100% 10.800 7.560 N Cnpy2 n/a
8 TRCN0000134274 GATGCTTACAGACCTTTGAAA pLKO.1 445 CDS 100% 5.625 3.938 N CNPY1 n/a
9 TRCN0000136806 CCAAAGGTCAATGTCTGCATT pLKO.1 648 3UTR 100% 4.950 3.465 N CNPY1 n/a
10 TRCN0000138166 CAAGAGATTCGCTCCTAGGAA pLKO.1 378 CDS 100% 3.000 2.100 N CNPY1 n/a
11 TRCN0000136713 GCTGTCTGATAAGAACTGGAT pLKO.1 984 3UTR 100% 2.640 1.848 N CNPY1 n/a
12 TRCN0000134169 CCTTTGAAATTTGCGTGTGAA pLKO.1 457 CDS 100% 4.950 2.970 N CNPY1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001369813.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05410 pDONR223 95.9% 50.8% 50.8% None 1_267del n/a
2 ccsbBroad304_05410 pLX_304 0% 50.8% 50.8% V5 1_267del n/a
3 TRCN0000469432 CTCCGCCGAGGCTGCTTGGACTGA pLX_317 100% 50.8% 50.8% V5 1_267del n/a
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