Construct: ORF ccsbBroadEn_05435
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016347.1_s300c1, BRDN0000388171
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CLEC4D (338339)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 338339 | CLEC4D | C-type lectin domain family... | NM_080387.5 | 100% | 100% | |
| 2 | human | 338339 | CLEC4D | C-type lectin domain family... | XM_011520632.2 | 100% | 100% | |
| 3 | human | 338339 | CLEC4D | C-type lectin domain family... | XM_011520633.2 | 60.6% | 59.5% | 385_386insACTTTATTATTCAGT;392delC;393_394ins238 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 711
- ORF length:
- 645
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GCTAGAAAAA CCTCAAAGTA AACTGGAAGG AGGCATGCAT CCCCAGCTGA 121 TACCTTCGGT TATTGCTGTA GTTTTCATCT TACTTCTCAG TGTCTGTTTT ATTGCAAGTT 181 GTTTGGTGAC TCATCACAAC TTTTCACGCT GTAAGAGAGG CACAGGAGTG CACAAGTTAG 241 AGCACCATGC AAAGCTCAAA TGCATCAAAG AGAAATCAGA ACTGAAAAGT GCTGAAGGGA 301 GCACCTGGAA CTGTTGTCCT ATTGACTGGA GAGCCTTCCA GTCCAACTGC TATTTTCCTC 361 TTACTGACAA CAAGACGTGG GCTGAGAGTG AAAGGAACTG TTCAGGGATG GGGGCCCATC 421 TGATGACCAT CAGCACGGAA GCTGAGCAGA ACTTTATTAT TCAGTTTCTG GATAGACGGC 481 TTTCCTATTT CCTTGGACTT AGAGATGAGA ATGCCAAAGG TCAGTGGCGT TGGGTGGACC 541 AGACGCCATT TAACCCACGC AGAGTATTCT GGCATAAGAA TGAACCCGAC AACTCTCAGG 601 GAGAAAACTG TGTTGTTCTT GTTTATAACC AAGATAAATG GGCCTGGAAT GATGTTCCTT 661 GTAACTTTGA AGCAAGTAGG ATTTGTAAAA TACCTGGAAC AACATTGAAC TACCCAACTT 721 TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac