Construct: ORF ccsbBroadEn_05456

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002920.1_s300c1, BRDN0000457054
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZNF181 (339318)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 339318 ZNF181 zinc finger protein 181 NM_001029997.4 100% 100%
2 human 339318 ZNF181 zinc finger protein 181 XM_005258849.2 100% 100%
3 human 339318 ZNF181 zinc finger protein 181 XM_006723183.3 100% 100%
4 human 339318 ZNF181 zinc finger protein 181 NM_001145665.2 99.8% 99.8% 128_129insAGC
5 human 339318 ZNF181 zinc finger protein 181 XM_005258850.2 99.8% 99.8% 128_129insAGC
6 human 339318 ZNF181 zinc finger protein 181 XM_017026739.2 99.8% 99.8% 128_129insAGC
7 human 339318 ZNF181 zinc finger protein 181 XM_005258851.3 99.2% 99.2% 215_216insAGGTATGATTCC
8 human 339318 ZNF181 zinc finger protein 181 XM_006723184.3 99.1% 99.1% 128_129insAGC;212_213insAGGTATGATTCC
9 human 339318 ZNF181 zinc finger protein 181 XM_017026740.1 95.7% 95.4% (many diffs)
10 human 55900 ZNF302 zinc finger protein 302 NM_001289182.1 66.8% 63.3% (many diffs)
11 human 55900 ZNF302 zinc finger protein 302 NM_001289184.1 66.8% 63.3% (many diffs)
12 human 55900 ZNF302 zinc finger protein 302 NM_001289185.1 66.8% 63.3% (many diffs)
13 human 55900 ZNF302 zinc finger protein 302 XM_017026982.1 66.8% 63.3% (many diffs)
14 human 55900 ZNF302 zinc finger protein 302 XM_024451604.1 66.8% 63.3% (many diffs)
15 human 55900 ZNF302 zinc finger protein 302 NM_001012320.2 66.7% 63.2% (many diffs)
16 human 55900 ZNF302 zinc finger protein 302 NM_001289183.1 66.7% 63.2% (many diffs)
17 human 55900 ZNF302 zinc finger protein 302 NM_001289186.1 66.7% 63.2% (many diffs)
18 human 55900 ZNF302 zinc finger protein 302 NM_001289187.2 66.7% 63.2% (many diffs)
19 human 55900 ZNF302 zinc finger protein 302 NM_018443.3 66.7% 63.2% (many diffs)
20 human 100129800 ZNF807P zinc finger protein 807, ps... NR_146880.1 65.1% (many diffs)
21 human 55900 ZNF302 zinc finger protein 302 XM_017026978.1 62% 58.5% (many diffs)
22 human 55900 ZNF302 zinc finger protein 302 XM_024451603.1 62% 58.5% (many diffs)
23 human 55900 ZNF302 zinc finger protein 302 NM_001289181.1 61.8% 58.3% (many diffs)
24 human 55900 ZNF302 zinc finger protein 302 XM_017026979.1 61.8% 58.3% (many diffs)
25 human 55900 ZNF302 zinc finger protein 302 XM_017026980.2 61.8% 58.3% (many diffs)
26 human 55900 ZNF302 zinc finger protein 302 XM_017026981.2 61.8% 58.3% (many diffs)
27 human 55900 ZNF302 zinc finger protein 302 NR_110322.1 55.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1782
ORF length:
1713
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCTCAGGTG ACATTTAATG ATGTGGCTAT AGACTTCACT CATGAAGAGT
121GGGGATGGCT CAGTTCTGCT CAGAGGGACT TATACAAGGA TGTGATGGTC CAGAATTATG
181AGAACCTGGT CTCTGTAGCA GGTCTTTCTG TAACTAAGCC ATATGTGATC ACGTTATTGG
241AGGATGGAAA AGAGCCCTGG ATGATGGAGA AAAAACTGTC AAAAGGTATG ATTCCAGATT
301GGGAATCAAG ATGGGAAAAC AAGGAATTAT CAACAAAGAA GGATAATTAT GATGAAGATT
361CACCCCAAAC AGTAATAATA GAAAAAGTTG TAAAACAAAG TTATGAATTT TCAAATTCTA
421AGAAGAATTT GGAATATATA GAGAAGTTGG AAGGGAAGCA TGGAAGTCAG GTAGACCATT
481TCAGACCAGC AATTCTCACC TCTAGAGAAA GCCCCACTGC AGACAGTGTT TACAAATACA
541ATATATTTAG AAGCACCTTT CATTCAAAGT CTACTCTTTC TGAACCACAA AAAATTTCTG
601CTGAAGGGAA TTCACACAAA TATGATATAT TAAAGAAGAA CTTACCAAAA AAGTCAGTTA
661TAAAAAATGA GAAAGTCAAT GGTGGAAAGA AACTTTTGAA TTCTAATAAA AGTGGGGCAG
721CCTTCAGCCA GGGCAAATCT CTTACCCTTC CCCAGACTTG TAATAGAGAG AAAATCTATA
781CATGCAGTGA ATGTGGGAAA GCCTTTGGCA AACAGTCAAT CCTCAATCGC CACTGGAGAA
841TTCATACAGG AGAGAAGCCC TATGAATGTC GTGAATGTGG GAAGACTTTT AGCCATGGCT
901CATCCCTTAC ACGACATCTG ATAAGCCATA GTGGAGAGAA ACCTTACAAA TGTATTGAAT
961GTGGGAAGGC CTTTAGCCAT GTCTCATCAC TTACTAACCA TCAGAGCACT CACACTGGAG
1021AGAAACCATA TGAATGTATG AACTGTGGAA AGTCTTTTAG TCGTGTGTCC CATCTTATTG
1081AACATCTAAG AATTCATACT CAAGAAAAAC TCTATGAGTG TCGTATATGT GGAAAGGCCT
1141TCATTCATAG GTCATCTCTC ATTCACCATC AGAAAATCCA TACTGGAGAG AAGCCTTATG
1201AATGTAGAGA ATGTGGGAAA GCTTTCTGCT GTAGCTCACA CCTTACTCGA CATCAAAGAA
1261TTCACACTAT GGAGAAACAA TATGAATGCA ACAAATGTCT GAAAGTCTTT AGTAGCCTCT
1321CATTTCTTGT TCAGCATCAG AGTATTCATA CTGAAGAAAA ACCCTTTGAA TGTCAGAAAT
1381GCAGGAAATC CTTCAACCAG CTTGAATCAC TGAATATGCA TTTGAGAAAT CACATTAGAT
1441TGAAACCCTA CGAATGCAGT ATATGTGGGA AAGCCTTTAG TCATAGGTCA TCCCTGCTTC
1501AACATCACAG AATTCATACT GGAGAGAAAC CTTATGAATG TATTAAATGT GGGAAGACCT
1561TCAGCTGTAG TTCAAACCTT ACCGTACATC AGAGAATTCA CACTGGAGAA AAGCCATATA
1621AATGTAATGA GTGTGGGAAA GCTTTTAGCA AAGGCTCAAA TCTTACTGCC CATCAAAGAG
1681TACATAATGG AGAGAAACCC AATAGTGTGG TAAGTGTGGA AAAGCCTTTA GACTATATGA
1741ATCACTATAC ATGTGAGAAA TCTTACAGAA GAGAAACTGT ATTGCCAACT TTCTTGTACA
1801AAGTTGGcat tataagaaag cattgcttat caatttgttg caacgaac

Download FASTA (ORF) (Full)

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