Construct: ORF ccsbBroadEn_05460
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003143.1_s300c1, BRDN0000387753
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD45 (339416)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | NM_198493.3 | 100% | 100% | |
| 2 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_011509466.2 | 100% | 100% | |
| 3 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_011509470.2 | 100% | 100% | |
| 4 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_024446626.1 | 100% | 100% | |
| 5 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_024446627.1 | 100% | 100% | |
| 6 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_017001123.1 | 93% | 93% | 1_60del |
| 7 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_011509471.2 | 61.5% | 57.7% | 1_60del;554_555ins95;588_589ins175 |
| 8 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XM_017001124.1 | 57.9% | 58% | 1_60del;558_558delCins301 |
| 9 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | NR_158771.1 | 26.4% | 1_50del;544_545ins95;754_2565del | |
| 10 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XR_921771.2 | 25% | (many diffs) | |
| 11 | human | 339416 | ANKRD45 | ankyrin repeat domain 45 | XR_921770.2 | 23.5% | 1_1699del;2430_2733del;2802_3387del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 867
- ORF length:
- 798
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAGTCAGAA GGACCTCCAG AGTCAGAGAG TTCAGAATTT TTCTCACAGC 121 AAGAAGAGGA AAATGAAGAA GAAGAAGCCC AAGAACCAGA GGAAACAGGC CCTAAGAACC 181 CCCTTTTACA ACCTGCTCTC ACAGGGGATG TAGAGGGTTT GCAGAAGATA TTTGAGGATC 241 CTGAGAATCC TCATCATGAA CAGGCCATGC AGCTTCTCTT AGAAGAAGAC ATCGTTGGGA 301 GAAATTTGTT GTATGCAGCT TGCATGGCTG GGCAAAGTGA CGTGATTAGA GCTTTGGCAA 361 AATATGGTGT GAATCTGAAT GAAAAAACCA CCAGAGGGTA CACACTCTTA CATTGTGCTG 421 CAGCCTGGGG TCGTTTGGAA ACTTTGAAAG CACTGGTAGA ACTGGATGTT GATATAGAAG 481 CTTTGAACTT CCGGGAAGAA AGGGCTCGAG ATGTTGCTGC TAGATATTCT CAGACTGAGT 541 GTGTTGAATT CCTGGACTGG GCAGATGCAA GGCTGACTCT GAAAAAATAT ATTGCAAAAG 601 TCTCTTTAGC TGTTACTGAC ACAGAAAAGG GATCAGGGAA ACTCCTTAAG GAAGACAAGA 661 ATACCATCCT CAGTGCATGC CGTGCAAAAA ATGAGTGGTT GGAAACCCAT ACAGAAGCTT 721 CCATTAATGA GCTTTTTGAG CAGAGACAAC AACTGGAAGA TATTGTGACT CCTATCTTCA 781 CAAAAATGAC TACACCATGT CAAGTGAAAA GTGCCAAATC TGTAACAAGC CATGACCAGA 841 AGAGAAGTCA AGATGATACC TCCAACTTGC CAACTTTCTT GTACANAAGT tggcattata 901 agaaagcatt gcttatcaat ttgttgcaac gaac