Construct: ORF ccsbBroadEn_05471

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015719.1_s300c1, BRDN0000387767
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABCB5 (340273)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 340273 ABCB5 ATP binding cassette subfam... NM_178559.6 100% 100%
2 human 340273 ABCB5 ATP binding cassette subfam... XM_011515367.2 100% 100%
3 human 340273 ABCB5 ATP binding cassette subfam... NM_001163941.2 64.5% 64.5% 1_1335del
4 human 340273 ABCB5 ATP binding cassette subfam... NM_001163942.2 15.9% 15.2% (many diffs)
5 human 340273 ABCB5 ATP binding cassette subfam... NM_001163993.3 15.4% 15.2% 371_372insGGC;374_375delAAinsGC;378_379ins2055
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2505
ORF length:
2436
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGTGGATGAG AATGACATCA GAGCTTTAAA TGTGCGGCAT TATCGAGACC
121ATATTGGAGT GGTTAGTCAA GAGCCTGTTT TGTTCGGGAC CACCATCAGT AACAATATCA
181AGTATGGACG AGATGATGTG ACTGATGAAG AGATGGAGAG AGCAGCAAGG GAAGCAAATG
241CGTATGATTT TATCATGGAG TTTCCTAATA AATTTAATAC ATTGGTAGGG GAAAAAGGAG
301CTCAAATGAG TGGAGGGCAG AAACAGAGGA TCGCAATTGC TCGTGCCTTA GTTCGAAACC
361CCAAGATTCT GATTTTAGAT GAGGCTACGT CTGCCCTGGA TTCAGAAAGC AAGTCAGCTG
421TTCAAGCTGC ACTGGAGAAG GCGAGCAAAG GTCGGACTAC AATCGTGGTA GCACACCGAC
481TTTCTACTAT TCGAAGTGCA GATTTGATTG TGACCCTAAA GGATGGAATG CTGGCGGAGA
541AAGGAGCACA TGCTGAACTA ATGGCAAAAC GAGGTCTATA TTATTCACTT GTGATGTCAC
601AGGATATTAA AAAAGCTGAT GAACAGATGG AGTCAATGAC ATATTCTACT GAAAGAAAGA
661CCAACTCACT TCCTCTGCAC TCTGTGAAGA GCATCAAGTC AGACTTCATT GACAAGGCTG
721AGGAATCCAC CCAATCTAAA GAGATAAGTC TTCCTGAAGT CTCTCTATTA AAAATTTTAA
781AGTTAAACAA GCCTGAATGG CCTTTTGTGG TTCTGGGGAC ATTGGCTTCT GTTCTAAATG
841GAACTGTTCA TCCAGTATTT TCCATCATCT TTGCAAAAAT TATAACCATG TTTGGAAATA
901ATGATAAAAC CACATTAAAG CATGATGCAG AAATTTATTC CATGATATTC GTCATTTTGG
961GTGTTATTTG CTTTGTCAGT TATTTCATGC AGGGATTATT TTACGGCAGA GCAGGGGAAA
1021TTTTAACGAT GAGATTAAGA CACTTGGCCT TCAAAGCCAT GTTATATCAG GATATTGCCT
1081GGTTTGATGA AAAGGAAAAC AGCACAGGAG GCTTGACAAC AATATTAGCC ATAGATATAG
1141CACAAATTCA AGGAGCAACA GGTTCCAGGA TTGGCGTCTT AACACAAAAT GCAACTAACA
1201TGGGACTTTC AGTTATCATT TCCTTTATAT ATGGATGGGA GATGACATTC CTGATTCTGA
1261GTATTGCTCC AGTACTTGCC GTGACAGGAA TGATTGAAAC CGCAGCAATG ACTGGATTTG
1321CCAACAAAGA TAAGCAAGAA CTTAAGCATG CTGGAAAGAT AGCAACTGAA GCTTTGGAGA
1381ATATACGTAC TATAGTGTCA TTAACAAGGG AAAAAGCCTT CGAGCAAATG TATGAAGAGA
1441TGCTTCAGAC TCAACACAGA AATACCTCGA AGAAAGCACA GATTATTGGA AGCTGTTATG
1501CATTCAGCCA TGCCTTTATA TATTTTGCCT ATGCGGCAGG GTTTCGATTT GGAGCCTATT
1561TAATTCAAGC TGGACGAATG ACCCCAGAGG GCATGTTCAT AGTTTTTACT GCAATTGCAT
1621ATGGAGCTAT GGCCATCGGA GAAACGCTCG TTTTGGCTCC TGAATATTCC AAAGCCAAAT
1681CGGGGGCTGC GCATCTGTTT GCCTTGTTGG AAAAGAAACC AAATATAGAC AGCCGCAGTC
1741AAGAAGGGAA AAAGCCAGAC ACATGTGAAG GGAATTTAGA GTTTCGAGAA GTCTCTTTCT
1801TCTATCCATG TCGCCCAGAT GTTTTCATCC TCCGTGGCTT ATCCCTCAGT ATTGAGCGAG
1861GAAAGACAGT AGCATTTGTG GGGAGCAGCG GCTGTGGGAA AAGCACTTCT GTTCAACTTC
1921TGCAGAGACT TTATGACCCC GTGCAAGGAC AAGTGCTGTT TGATGGTGTG GATGCAAAAG
1981AATTGAATGT ACAGTGGCTC CGTTCCCAAA TAGCAATCGT TCCTCAAGAG CCTGTGCTCT
2041TCAACTGCAG CATTGCTGAG AACATCGCCT ATGGTGACAA CAGCCGTGTG GTGCCATTAG
2101ATGAGATCAA AGAAGCCGCA AATGCAGCAA ATATCCATTC TTTTATTGAA GGTCTCCCTG
2161AGAAATACAA CACACAAGTT GGACTGAAAG GAGCACAGCT TTCTGGCGGC CAGAAACAAA
2221GACTAGCTAT TGCAAGGGCT CTTCTCCAAA AACCCAAAAT TTTATTGTTG GATGAGGCCA
2281CTTCAGCCCT CGATAATGAC AGTGAGAAGG TGGTTCAGCA TGCCCTTGAT AAAGCCAGGA
2341CGGGAAGGAC ATGCCTAGTG GTCACTCACA GGCTCTCTGC AATTCAGAAC GCAGATTTGA
2401TAGTGGTTCT GCACAATGGA AAGATAAAGG AACAAGGAAC TCATCAAGAG CTCCTGAGAA
2461ATCGAGACAT ATATTTTAAG TTAGTGAATG CACAGTCAGT GCAGTTGCCA ACTTTCTtgt
2521acaaagttgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)