Construct: ORF ccsbBroadEn_05492
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002002.1_s300c1, BRDN0000398608
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SAMD7 (344658)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 344658 | SAMD7 | sterile alpha motif domain ... | NM_001304366.2 | 100% | 100% | |
| 2 | human | 344658 | SAMD7 | sterile alpha motif domain ... | NM_182610.4 | 100% | 100% | |
| 3 | human | 344658 | SAMD7 | sterile alpha motif domain ... | NR_130713.2 | 53.7% | 1_366del;655_767del;1818_2489del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1407
- ORF length:
- 1338
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCTGTGAAC CCTTTATTGA CACCAACAGG GCAGCAGACA ATCCCACTGA 121 TCCCCTCACC ATTTGGGCCT CCAACTGTGG ACAGAGATGT ATTGCCTTCC ACCGTAGCTC 181 CAACTGACCC AAGACAGTTT TGCGTTCCTT CCCAATTTGG ATCCTCTGTT CTACCAAACA 241 CAAATATGGC AAATGTGTTG TCCAGTCGGA TCTACCCAGG TTGGGGCATT TTACCACCTG 301 AATCCATAAA GGCAGTGGCC AGAAGGAATG AAATGATTCA ACGGCATCAT ACTGCCAGGA 361 CAGAAATGGA AATGTATGCT ATTTACCAGC AAAGGAGAAT GGAAAAAATT AATCCCAAGG 421 GACTAGCAGG CCTAGGGATA CCCTTCCTCT ATGGCTCCAG TGTCCCAGCT GCCCCCGCTG 481 CCTACCATGG CAGGAGCATG CTCCCTGCCG GTGACCTGCA TTTTCACAGA AGCACCCTCA 541 GAAACCTTCA GGGAAACCCC ATGCTAGCGG CAACTGCACC ACACTTTGAG GAGAGCTGGG 601 GGCAGAGATG TCGTCGACTC AGGAAAAATA CAGGGAATCA AAAAGCTCTA GACAGTGATG 661 CTGAGAGTTC CAAAAGTCAA GCAGAAGAAA AAATCCTAGG TCAGACTCAT GCAGTTCCCT 721 ATGAAGAGGA TCATTATGCA AAAGACCCAG ACATTGAAGC ACCCAGCAAC CAGAAGTCAA 781 GTGAAACGAA TGAAAAGCCA ACGACAGCTC TTGCCAACAC CTGTGGAGAG CTCGAGCCCA 841 CCCATAGGAA ACCCTGGGGG TCTCACACCA CTACCCTGAA AGCAAAGGCC TGGGACGATG 901 GGAAAGAGGA GGCTTCGGAG CAGATTTTTG CAACCTGTGA TGAAAAGAAT GGGGTTTGCC 961 CTCCAGTTCC TCGACCATCT CTGCCAGGAA CACATGCACT GGTTACAATT GGGGGGAATC 1021 TTTCTTTGGA TGAAGATATT CAGAAGTGGA CCGTGGATGA TGTGCACAGC TTCATTCGCA 1081 GCCTTCCAGG TTGTTCAGAC TATGCTCAGG TATTTAAAGA TCATGCAATT GATGGAGAAA 1141 CTTTGCCATT ACTCACAGAA GAGCATCTTC GAGGCACTAT GGGATTAAAG CTAGGGCCGG 1201 CACTAAAAAT TCAGTCACAG GTATCTCAGC ATGTGGGAAG TATGTTCTAC AAGAAAACTC 1261 TTTCATTTCC TATAAGACAA GCATTTGATC AACCAGCAGA TACATCCCCT CTTCTGGATC 1321 CTAATTCCTG GAGTGATACA ATGAACATTT TTTGTCCCCA GGATACAATA ATTCCTAAAG 1381 GAATTGAGCG AGGTAGTATG AGAAACTTGC CAACTTTCTT GTACAAAGTt ggcattataa 1441 gaaagcattg cttatcaatt tgttgcaacg aac