Construct: ORF ccsbBroadEn_05507
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005253.1_s300c1, BRDN0000456317
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LANCL3 (347404)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 347404 | LANCL3 | LanC like 3 | NM_198511.3 | 100% | 100% | |
| 2 | human | 347404 | LANCL3 | LanC like 3 | NM_001170331.2 | 91.2% | 86% | (many diffs) |
| 3 | human | 347404 | LANCL3 | LanC like 3 | XM_011543904.2 | 47.6% | 41.8% | (many diffs) |
| 4 | mouse | 236285 | Lancl3 | LanC lantibiotic synthetase... | NM_173414.3 | 81.1% | 82% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1233
- ORF length:
- 1164
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGACACCAAG CGCTGCTTCG CCAATCGCTT CGATGACTAC CAGGGCAGCC 121 TGCTGGCGGG CCAGTGTGAG GAGGCGGTGG CGCCCTTGGT CACCGCCACC ATCGAGCGCA 181 TCCTCCAGGA GCTTCCCCCA CTCGGGGGCG GCGCGGAGGC CCGAGGGGCG ACGGCGGGGG 241 CTAGCGCCTG CCAGGGGGGG CTTTATGGCG GCGTGGCCGG AGTGGCGTAT ATGCTCTACC 301 ACGTCTCGCA GAGCCCGCTT TTCGCCACGG CCCGGGAACG CTACCTGCGC TCGGCTAAGC 361 GCCTCATCGA CGCGTGCGCC CGCGCTGAGG AGTGGGGCGA ACCGGACGCC GACACCCGCG 421 CCGCCTTCCT GCTCGGGGGC GCGGGCGTGT ACGCCGTGGC CACGCTCGTA TACCACGCCC 481 TGGGCCGGTC CGACTACGTG CAGCCGCTGG GCAAGTTCCG GGCTCTGTGT GCCGTCTGCG 541 CGCCGGTCTC CTTCCTGGAG TGCGGCTCCG ACGAGCTGTT CGTGGGCCGC GCGGGTTACC 601 TGTGTGCCGC GCTGGTGCTC AAGCAGAAAC TCGCCCAGGA GGTGCTGACT CCAGCACAGA 661 TCAAGTCAAT TTGTCAGGCA ATTCTGGACT CTGGGAAGCA GTATGCCATA AAGAAGAGGA 721 AACCATTCCC CCTGATGTAT TCTTACTATG GAACCGAATA CTTGGGGGCA GCTCACGGCT 781 TGTCGTCTAT TCTTCAGATG CTTCTTTCTT ACCATGAGCA TCTCAAGCCC TCAGATCGGG 841 AATTGGTATG GCAGAGCGTG GACTTTCTCA TGGAACAGGA ACAAAACTGC AACTGGCCAC 901 CTGAGCTCGG CGAGACCATC GAGAGAGAGA ATGAGCTGGT GCACTGGTGC CATGGCGCTC 961 CAGGAATTGC CTATCTGTTT GCCAAAGCTT ATCTGGTTTC CAAGAAACCG CAGTACCTGG 1021 ACACATGTAT TCGGTGTGGG GAACTCACAT GGCAGAAAGG CCTGCTAAAG AAGGGGCCTG 1081 GGATTTGCCA TGGAGTAGCC GGCAGTGCCT ATGTCTTCCT GCTGCTGTAC CGGCTCACGG 1141 GAAACTCTAA ATACATCTAC CGAGCTCAAA GTTCATTCCC TGTAAACTTG ATAAAGATGG 1201 AACATCTGCT GTATACCAGA CAACATTGCT TTTTGCCAAC TTTCTTGTAC AAAGTTGGca 1261 ttataagaaa gcattgctta tcaatttgtt gcaacgaac