Construct: ORF ccsbBroadEn_05541
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011248.1_s300c1, BRDN0000387903
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF829 (374899)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 374899 | ZNF829 | zinc finger protein 829 | NM_001037232.3 | 100% | 100% | |
| 2 | human | 374899 | ZNF829 | zinc finger protein 829 | XM_005258876.4 | 100% | 100% | |
| 3 | human | 374899 | ZNF829 | zinc finger protein 829 | XM_011526933.2 | 100% | 100% | |
| 4 | human | 374899 | ZNF829 | zinc finger protein 829 | NM_001171979.2 | 84.2% | 84.2% | 1_243del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1365
- ORF length:
- 1296
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GCCCCATTCT CCTCTGATCT CCATTCCTCA TGTGTGGTGT CACCCAGAAG 121 AGGAGGAAAG AATGCATGAT GAACTTCTAC AAGCAGTATC CAAGGGGCCG GTGATGTTCA 181 GGGATGTTTC CATAGACTTC TCTCAAGAGG AATGGGAATG CCTGGACGCT GATCAGATGA 241 ATTTATACAA AGAAGTGATG TTGGAGAATT TCAGCAACCT GGTTTCAGTG GGACTTTCCA 301 ATTCTAAGCC AGCTGTGATC TCCTTATTGG AACAAGGAAA AGAGCCCTGG ATGGTTGATA 361 GAGAGCTGAC TAGAGGCCTG TGTTCAGATC TGGAATCAAT GTGTGAGACC AAAATATTAT 421 CTCTAAAGAA GAGACATTTC AGTCAAGTAA TAATTACCCG TGAAGACATG TCTACTTTTA 481 TTCAGCCCAC ATTTCTTATT CCACCTCAAA AAACTATGAG TGAAGAGAAA CCATGGGAAT 541 GTAAGATATG TGGAAAGACC TTTAATCAAA ACTCACAATT TATCCAACAT CAGAGAATTC 601 ATTTTGGTGA AAAACACTAT GAATCTAAGG AGTATGGGAA GTCCTTTAGT CGTGGCTCAC 661 TCGTTACTCG ACATCAGAGG ATTCACACTG GTAAAAAACC CTATGAATGT AAGGAATGTG 721 GCAAGGCTTT TAGTTGTAGT TCATATTTTT CTCAACATCA GAGGATTCAC ACTGGTGAGA 781 AACCCTATGA ATGTAAGGAA TGTGGAAAAG CCTTTAAGTA TTGCTCAAAC CTTAATGATC 841 ATCAGAGAAT TCACACTGGT GAGAAACCCT ATGAATGTAA AGTATGTGGA AAAGCCTTTA 901 CTAAAAGTTC ACAACTTTTT CTACATCTGA GAATTCATAC TGGTGAGAAA CCTTATGAAT 961 GTAAAGAATG TGGGAAAGCC TTTACTCAAC ACTCAAGGCT TATTCAGCAT CAGAGAATGC 1021 ATACTGGTGA GAAACCTTAT GAATGTAAGC AGTGTGGGAA GGCCTTTAAT AGTGCCTCAA 1081 CACTTACTAA CCATCACAGA ATTCATGCTG GTGAGAAGCT CTATGAATGT GAAGAATGTA 1141 GAAAGGCCTT TATTCAGAGC TCAGAACTTA TTCAACATCA GAGAATCCAT ACAGATGAAA 1201 AACCATATGA ATGTAATGAA TGTGGGAAGG CCTTTAATAA AGGCTCAAAT CTTACTCGAC 1261 ATCAGAGAAT TCACACTGGT GAGAAACCCT ATGACTGTAA GGAATGTGGA AAGGCTTTTG 1321 GTAGTCGCTC TGACCTCATT CGCCATGAGG GAATTCATAC TGGTTTGCCA ACTTTCTTGT 1381 ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c