Construct: ORF ccsbBroadEn_05555

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003942.1_s300c1, BRDN0000391453
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CATSPER4 (378807)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 378807 CATSPER4 cation channel sperm associ... NM_198137.1 100% 100%
2 human 378807 CATSPER4 cation channel sperm associ... XM_011541432.3 81.7% 71.6% 985_986insAGAC;1158_1159ins254
3 human 378807 CATSPER4 cation channel sperm associ... XM_011541433.2 67% 55% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1485
ORF length:
1416
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GAGGGATAAT GAAAAGGCCT GGTGGCAGCA ATGGACCTCC CATACAGGCC
121TCGAGGGGTG GGGCGGGACT CAGGAGGACC GTATGGGGTT TGGAGGGGCA GTAGCTGCAC
181TGAGGGGCCG CCCCTCTCCC CTGCAGAGTA CCATTCACGA GTCCTACGGT CGGCCAGAGG
241AGCAAGTGCT CATCAACCGC CAGGAAATCA CGAACAAAGC GGACGCCTGG GACATGCAGG
301AGTTCATCAC TCACATGTAC ATCAAGCAGC TGCTCCGACA CCCCGCCTTC CAACTGCTGC
361TGGCCCTGCT GCTGGTGATC AATGCCATCA CCATCGCTCT CCGTACCAAC TCCTACCTGG
421ACCAGAAACA CTATGAGTTG TTCTCTACCA TAGATGACAT TGTGCTGACC ATCCTTCTTT
481GTGAGGTTCT CCTTGGCTGG CTCAATGGCT TCTGGATTTT CTGGAAGGAC GGCTGGAACA
541TCCTCAACTT CATTATCGTC TTTATCTTGC TCTTGCGGTT CTTCATTAAT GAAATCAATA
601TTCCCTCCAT CAACTACACT CTCAGGGCGC TTCGTCTGGT GCATGTGTGC ATGGCGGTGG
661AGCCCCTCGC CCGGATCATC CGCGTCATCC TGCAGTCGGT GCCTGACATG GCCAATATCA
721TGGTCCTCAT CCTCTTCTTC ATGCTGGTTT TTTCCGTGTT TGGAGTAACA CTCTTTGGTG
781CATTCGTGCC CAAGCATTTC CAGAACATAC AGGTTGCGCT GTACACCCTC TTCATCTGCA
841TCACCCAGGA CGGCTGGGTG GACATCTACA GTGACTTCCA GACAGAGAAG AGGGAATATG
901CAATGGAGAT TGGGGGTGCC ATCTACTTTA CCATCTTCAT CACCATCGGT GCCTTCATTG
961GCATCAACCT GTTCGTCATC GTGGTGACCA CCAACCTGGA GCAAATGATG AAGGCAGGAG
1021AGCAGGGACA ACAGCAACGA ATAACCTTTA GTGAGACAGG CGCAGAGGAA GAGGAGGAGA
1081ATGACCAGCT GCCACTGGTG CATTGTGTGG TCGCCCGCTC GGAGAAATCT GGTCTCCTCC
1141AGGAACCCCT TGCGGGAGGC CCCCTGTCGA ACCTCTCAGA AAACACGTGT GACAACTTTT
1201GCTTGGTGCT TGAGGCAATA CAGGAGAACC TGAGGCAGTA CAAGGAGATC CGAGATGAAC
1261TCAACATGAT TGTGGAGGAG GTGCGCGCAA TCCGCTTCAA CCAGGAGCAG GAGTCAGAGG
1321TGTTGAACAG GCGCTCGTCG ACGAGCGGGT CGTTGGAGAC TACGTCATCC AAGGACATCC
1381GCCAGATGTC TCAACAGCAA GACTTGCTCA GTGCGCTCGT TAGCATGGAA AAGGTTCATG
1441ACTCTAGCTC ACAAATACTC CTTAAAAAAC ACAAGAGCAG CCACTTGCCA ACTTTCTTGT
1501ACAAAGTtgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)