Construct: ORF ccsbBroadEn_05586
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007962.1_s300c1, BRDN0000456085
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SMIM1 (388588)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 388588 | SMIM1 | small integral membrane pro... | NM_001163724.2 | 100% | 100% | |
| 2 | human | 388588 | SMIM1 | small integral membrane pro... | NM_001288583.1 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 303
- ORF length:
- 234
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TCAAAAAAGT 61 TGAGCACCAT GCAGCCCCAG GAGAGCCACG TCCACTATAG TAGGTGGGAG GACGGCAGCA 121 GGGACGGAGT CAGCCTAGGG GCTGTGTCCA GCACAGAAGA GGCCTCACGC TGCCGCAGGA 181 TCTCCCAGAG GCTGTGCACG GGCAAGCTGG GCATCGCCAT GAAGGTGCTG GGCGGCGTGG 241 CCCTCTTCTG GATCATCTTC ATCCTGGGCT ACCTCACAGG CTACTATGTG CACAAGTGCA 301 AATTGCCAAC TTTCTTGTAC AAAGTTGGca ttataagaaa gcattgctta tcaatttgtt 361 gcaacgaac