Construct: ORF ccsbBroadEn_05606
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000245.1_s300c1, BRDN0000394483
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- PAGE2B (389860)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 389860 | PAGE2B | PAGE family member 2B | NM_001015038.3 | 100% | 100% | |
| 2 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530787.2 | 100% | 100% | |
| 3 | human | 389860 | PAGE2B | PAGE family member 2B | XM_017029513.1 | 100% | 100% | |
| 4 | human | 203569 | PAGE2 | PAGE family member 2 | NM_207339.4 | 96% | 93.6% | (many diffs) |
| 5 | human | 203569 | PAGE2 | PAGE family member 2 | XM_017029353.1 | 96% | 93.6% | (many diffs) |
| 6 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530786.3 | 95.6% | 95.6% | 1_15del |
| 7 | human | 90737 | PAGE5 | PAGE family member 5 | NM_001013435.3 | 94.5% | 88.2% | (many diffs) |
| 8 | human | 389860 | PAGE2B | PAGE family member 2B | XM_011530785.2 | 82.8% | 82.8% | 1_69del |
| 9 | human | 90737 | PAGE5 | PAGE family member 5 | NM_130467.5 | 80.1% | 74.8% | (many diffs) |
| 10 | human | 100421746 | LOC100421746 | PAGE family member 5 pseudo... | NR_130179.1 | 61.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 402
- ORF length:
- 333
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTGAGCAT GTGAGAACAA GATCCCAATC CTCAGAAAGA GGAAATGACC 121 AAGAGTCTTC CCAGCCAGTT GGATCTGTGA TTGTCCAGGA GCCCACTGAG GAAAAACGTC 181 AAGAAGAGGA ACCACCAACT GATAATCAGG GTATTGCACC TAGTGGGGAG ATCGAAAATG 241 AAGGAGCACC TGCCGTTCAA GGGCCTGACA TGGAAGCTTT TCAACAGGAA CTGGCTCTGC 301 TTAAGATAGA GGATGAGCCT GGAGATGGTC CTGATGTCAG GGAGGGGATT ATGCCCACTT 361 TTGATCTCAC TAAAGTGCTG GAAGCAGGTG ATGCGCAACC ATTGCCAACT TTCTTGTACA 421 AAGTtggcat tataagaaag cattgcttat caatttgttg caacgaac