Construct: ORF ccsbBroadEn_05623
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012562.1_s300c1, BRDN0000455561
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIM61 (391712)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 391712 | TRIM61 | tripartite motif containing 61 | NM_001012414.3 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 696
- ORF length:
- 627
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAATTTGTT ACGGCCCTGG CTGACCTCCG AGCAGAGGCT AGCTGTCCCA 121 TCTGTCTGGA CTACTTGAAA GACCCAGTGA CCATCAGCTG TGGGCATAAC TTCTGTCTCT 181 CCTGCATCAT TATGTCCTGG AAGGATCTAC ATGATAGTTT CCCCTGCCCC TTTTGCCACT 241 TTTGCTGTCC AGAAAGGAAA TTTATAAGCA ATCCCCAGCT GGGTAGTTTG ACTGAAATTG 301 CTAAGCAACT CCAGATAAGA AGCAAGAAGA GGAAGAGGCA GGAAGAGAAG CATGTGTGTA 361 AGAAGCATAA TCAGGTTTTG ACTTTCTTCT GTCAGAAAGA CCTAGAGCTT TTATGTCCAA 421 GGTGCAGTTT GTCCACTGAT CACCAGCATC ACTGTGTTTG GCCCATAAAG AAGGCTGCCT 481 CCTATCATAG GAAAAAACTG GAGGAATACA ATGCACCGTG GAAGGAGAGA GTGGAACTAA 541 TTGAAAAAGT CATAACTATG CAAACCAGGA AATCACTGGA ACTGAAGAAA AAGATGGAGT 601 CTCCTTCTGT CACCAGGCTG GAGTGCAGTT GCACGATCTC GGCTCACTTC AACCTCCGCC 661 TCCCGGGATC AAGCGATTCT TCTGCCTCTG GCTCCTTGCC AACTTTCTTG TACAAAGTTG 721 Gcattataag aaagcattgc ttatcaattt gttgcaacga ac