Construct: ORF ccsbBroadEn_05638
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018257.1_s300c1, BRDN0000394999
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NCMAP (400746)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 400746 | NCMAP | non-compact myelin associat... | NM_001010980.5 | 100% | 100% | |
| 2 | human | 400746 | NCMAP | non-compact myelin associat... | XM_005245872.3 | 100% | 100% | |
| 3 | human | 400746 | NCMAP | non-compact myelin associat... | XM_011541463.2 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 375
- ORF length:
- 306
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACACAAAAG 61 TTGGCACCAT GACCACAGCC ACCCCTCTGG GGGATACCAC CTTCTTCTCA CTGAACATGA 121 CCACCAGGGG AGAAGACTTC CTGTATAAGA GTTCTGGAGC CATTGTTGCT GCCGTTGTGG 181 TGGTTGTCAT CATCATCTTC ACCGTGGTTC TGATCCTGCT GAAGATGTAC AACAGGAAAA 241 TGAGGACGAG GCGGGAACTA GAGCCCAAGG GCCCCAAGCC AACCGCCCCT TCTGCCGTGG 301 GCCCAAACAG CAACGGCAGC CAACACCCAG CAACTGTGAC CTTCAGTCCT GTTGACGTCC 361 AGGTGGAGAC GCGATTGCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct 421 tatcaatttg ttgcaacgaa c