Construct: ORF ccsbBroadEn_05643
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012179.1_s300c1, BRDN0000389915
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CCSER1 (401145)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | NM_207491.2 | 100% | 100% | |
| 2 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531957.2 | 95.4% | 95.3% | 1604_1699del |
| 3 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531958.2 | 94.4% | 94.3% | 1604_1699del;2106_2109delGGTC;2112_2113insCACATACCCTAGGGAATTC |
| 4 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008199.1 | 92.5% | 92.4% | (many diffs) |
| 5 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531956.2 | 91.4% | 91.1% | (many diffs) |
| 6 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531955.2 | 90.6% | 90.5% | (many diffs) |
| 7 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008197.1 | 90.4% | 90.3% | (many diffs) |
| 8 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008198.1 | 90% | 89.9% | (many diffs) |
| 9 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008196.1 | 88.7% | 88.6% | (many diffs) |
| 10 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531949.2 | 88.6% | 88.3% | (many diffs) |
| 11 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531950.2 | 88.6% | 88.3% | (many diffs) |
| 12 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531951.2 | 88.6% | 88.3% | (many diffs) |
| 13 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531948.1 | 86.7% | 86.4% | (many diffs) |
| 14 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531945.1 | 86.5% | 86.3% | (many diffs) |
| 15 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531946.2 | 86.5% | 86.3% | (many diffs) |
| 16 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531947.2 | 86.5% | 86.3% | (many diffs) |
| 17 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008195.1 | 86.1% | 85.8% | (many diffs) |
| 18 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531943.2 | 86% | 85.7% | (many diffs) |
| 19 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531941.2 | 85.9% | 85.6% | (many diffs) |
| 20 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531942.2 | 85.9% | 85.6% | (many diffs) |
| 21 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | NM_001145065.1 | 74.6% | 74.5% | (many diffs) |
| 22 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531936.1 | 72.1% | 71.8% | (many diffs) |
| 23 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531937.2 | 72.1% | 71.8% | (many diffs) |
| 24 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531938.2 | 72.1% | 71.8% | (many diffs) |
| 25 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_011531939.2 | 72.1% | 71.8% | (many diffs) |
| 26 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008194.1 | 72.1% | 71.8% | (many diffs) |
| 27 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XR_938735.2 | 70.8% | (many diffs) | |
| 28 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XR_938734.2 | 69.9% | (many diffs) | |
| 29 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XR_938733.2 | 69.2% | (many diffs) | |
| 30 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008200.1 | 69.1% | 64.5% | (many diffs) |
| 31 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XM_017008201.1 | 68.4% | 65.9% | (many diffs) |
| 32 | human | 401145 | CCSER1 | coiled-coil serine rich pro... | XR_001741218.1 | 65.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2097
- ORF length:
- 2031
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGG GGACTCAGGA TCAAGACGAT CTACCCTGGT CTCCCGGTTG CCAATATTCA 121 GAAGAAGTAT TAACAGAAGA CATGATTCTC TTCCTTCTTC ACCTTCTTCC AGTAATACAG 181 TTGGTGTCCA CAGTTCCTCT CCTTCCAGCA CTAACTCAAG CTCAGGTAGC ACAGGTAAAC 241 GGAGGAGCAT ATTCCGTACT CCTTCCATTA GCTTCCACCA TAAGAAGGGG AGTGAGCCTA 301 AGCAAGAGCC TACCAACCAG AACCTTAGTA TTTCAAATGG TGCTCAACCT GGTCACAGCA 361 ATATGCAGAA ACTGAGTTTG GAAGAACATA TTAAGACCAG GGGAAGACAT TCTGTTGGTT 421 TTAGTAGTTC ACGAAATAAG AAGATAACAA GATCTTTGAC AGAGGATTTT GAAAGGGAAA 481 AAGAGCACTC AACTAACAAG AATGTCTTTA TAAATTGTCT AAGTTCTGGC AAAAGTGAAG 541 GGGATGATTC TGGTTTCACA GAAGACCAAA CTCGTCGTTC TGTTAAGCAG TCAACAAGGA 601 AGCTACTCCC TAAATCTTTT TCATCTCACT ATAAATTTTC TAAGCCAGTT CTACAGAGCC 661 AATCCATTTC ATTGGTACAA CAGTCTGAAT TCTCATTGGA AGTTACACAG TACCAAGAGA 721 GAGAACCTGT ATTAGTAAGA GCTTCGCCAT CCTGTTCTGT GGATGTAACA GAACGGGCAG 781 GAAGCTCTTT ACAATCTCCT TTGCTTTCTG CTGATCTTAC CACAGCTCAG ACACCTTCAG 841 AATTTTTAGC CTTGACTGAA GATTCTGTGT CTGAAATGGA TGCATTTTCT AAAAGTGGAA 901 GCATGGCATC CCACTGTGAC AACTTTGGCC ACAATGATTC TACCTCTCAG ATGTCCCTCA 961 ATTCTGCTGC TGTTACAAAG ACAACAACAG AACTTACGGG AACTGTTCCC TGTGCAATTA 1021 TGTCTCCTGG GAAATATAGG TTAGAGGGTC AATGTAGCAC TGAATCTAAT TCATTACCGG 1081 AAACCTCTGC TGCTAATCAG AAGGAAGTGT TATTACAAAT TGCTGAACTA CCTGCTACAA 1141 GTGTGAGCCA CTCAGAGAGT AACCTACCAG CAGATAGTGA AAGAGAAGAA AATATAGGGT 1201 TACAAAATGG TGAAACAATG CTGGGGACAA ACTCCCCAAG GAAACTTGGA TTTTATGAGC 1261 AACATAAAGC AATAGCGGAA CATGTAAAAG GGATCCATCC TATTTCAGAT TCAAAGATAA 1321 TACCTACTTC TGGTGATCAT CATATTTTTA ACAAAACATC ACATGGATAT GAAGCAAATC 1381 CTGCCAAAGT TCTTGCCAGT AGTCTCAGTC CATTTCGTGA AGGAAGATTT ATAGAGAGGA 1441 GACTGCGATC CTCGTCAGAA GGCACTGCAG GGAGTAGCAG AATGATTTTG AAACCGAAAG 1501 ATGGAAATAT AGAAGAAGTT AATAGTTTAA GAAAGCAAAG AGCAGGTTCT TCATCTTCAA 1561 AAATGAACAG TTTGGATGTT TTGAATAATT TGGGATCTTG TGAACTGGAT GAAGATGATC 1621 TAATGCTTGA TCTTGAATTT TTAGAGGAAC AGAGTCTTCA CCCTTCTGTT TGCCGGGAGG 1681 ACTCATATCA CTCTGTCGTC TCATGTGCCG CAGTAGTTCT TACTCCTATG GAACCAATGA 1741 TAGAAATGAA GAAAAGAGAA GAACCAGAAT TTCCTGAGCC TTCCAAACAG AATCTTTCCC 1801 TGAAATTAAC AAAGGACGTT GATCAAGAAG CCAGGTGTTC CCACATCAGC CGAATGCCCA 1861 ACAGTCCATC TGCGGATTGG CCTCTACAAG GTGTGGAAGA AAACGGAGGC ATAGATTCTC 1921 TGCCATTCAG ACTGATGTTA CAGGACTGCA CGGCAGTCAA GACGTTATTA TTAAAGATGA 1981 AGAGAGTTCT TCAAGAGAGT GCAGACATGA GTCCAGCAAG CAGTACCACG TCACTTCCTG 2041 TTAGTCCTCT TACTGAAGAG CCAGTGCCTT TCAAGACCAC ATACCCTAGG GAATTCTGCC 2101 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 2161 aac