Construct: ORF ccsbBroadEn_05672
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000282.1_s300c1, BRDN0000455852
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC52 (440699)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440699 | LRRC52 | leucine rich repeat contain... | NM_001005214.4 | 100% | 100% |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1008
- ORF length:
- 939
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTCCCTTGCT TCAGGCCCTG GCCCTGGGTG GTTACTCTTT TCCTTTGGAA 121 TGGGGCTGGT ATCAGGGTCA AAGTGTCCAA ATAATTGTCT GTGTCAAGCC CAAGAAGTAA 181 TCTGCACAGG GAAGCAGTTA ACCGAATACC CCCTTGACAT ACCCCTGAAC ACCCGGAGGC 241 TGTTCCTGAA CGAGAACAGA ATCACTAGTT TGCCAGCAAT GCATCTAGGA CTCCTCAGTG 301 ACCTTGTTTA TTTGGACTGT CAGAACAACC GGATTCGAGA GGTGATGGAT TATACCTTCA 361 TCGGGGTCTT CAAACTCATC TACCTTGACC TCAGCTCCAA CAACCTAACC TCGATCTCCC 421 CATTCACTTT CTCGGTGCTC AGCAACCTGG TGCAGCTGAA CATTGCCAAC AACCCTCACC 481 TGTTATCGCT TCACAAGTTC ACCTTTGCCA ACACCACCTC TTTGAGGTAC CTGGACCTCA 541 GAAATACCGG CTTGCAGACC CTGGACAGTG CTGCCTTATA CCACCTCACT ACTCTGGAGA 601 CCCTGTTTCT GAGTGGAAAC CCCTGGAAGT GCAACTGCTC TTTCCTGGAC TTCGCCATCT 661 TCTTAATAGT GTTCCATATG GACCCCTCAG ATGATCTAAA TGCCACATGT GTGGAGCCCA 721 CAGAGCTGAC AGGGTGGCCC ATCACCCGGG TGGGGAACCC ACTCCGATAC ATGTGCATCA 781 CGCACCTGGA CCACAAAGAC TACATCTTCC TGCTGCTCAT CGGCTTCTGC ATCTTCGCCG 841 CGGGAACTGT GGCTGCCTGG CTCACAGGTG TGTGTGCTGT GCTCTACCAG AACACCCGCC 901 ACAAGTCGAG TGAAGAAGAT GAGGACGAGG CCGGGACTAG GGTGGAAGTC AGCCGGCGGA 961 TTTTTCAAAC CCAGACGAGC TCGGTCCAGG AGTTCCCTCA GCTTATTTTG CCAACTTTCT 1021 TGTACAAAGT TGGcattata agaaagcatt gcttatcaat ttgttgcaac gaac