Construct: ORF ccsbBroadEn_05679
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013397.1_s300c1, BRDN0000397242
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRARP (441478)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441478 | NRARP | NOTCH regulated ankyrin rep... | NM_001004354.3 | 100% | 100% | |
| 2 | mouse | 67122 | Nrarp | Notch-regulated ankyrin rep... | NM_025980.2 | 93.8% | 100% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 408
- ORF length:
- 342
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaGTTTG TACAAAAAAG 61 TTGGCATGAG CCAGGCCGAG CTGTCCACCT GCTCCGCGCC GCAGACGCAG CGCATCTTCC 121 AGGAGGCTGT GCGCAAGGGC AACACGCAGG AGCTGCAGTC GCTGCTGCAG AACATGACCA 181 ACTGCGAGTT CAACGTGAAC TCGTTCGGGC CCGAGGGCCA GACGGCGCTG CACCAGTCGG 241 TCATCGACGG CAACCTGGAG CTCGTGAAGC TGCTGGTCAA GTTCGGCGCC GACATCCGCC 301 TGGCCAACCG CGACGGCTGG AGCGCGCTGC ACATCGCCGC GTTCGGTGGC CACCAGGACA 361 TCGTGCTCTA TCTCATCACC AAGGCGAAGT ACGCGGCCAG CGGCCGGTGC CCAACTTTCT 421 TGTACAAAGT tggcattata agaaagcatt gcttatcaat ttgttgcaac gaac