Construct: ORF ccsbBroadEn_05682
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF007395.1_s300c1, BRDN0000397863
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CT45A5 (441521)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102723631 | CT45A10 | cancer/testis antigen famil... | NM_001291527.1 | 99.8% | 100% | 291C>T |
| 2 | human | 102723631 | CT45A10 | cancer/testis antigen famil... | NM_001291528.1 | 99.8% | 100% | 291C>T |
| 3 | human | 102723631 | CT45A10 | cancer/testis antigen famil... | NM_001291529.1 | 99.8% | 100% | 291C>T |
| 4 | human | 102723631 | CT45A10 | cancer/testis antigen famil... | NM_001291530.1 | 99.8% | 100% | 291C>T |
| 5 | human | 102723737 | CT45A8 | cancer/testis antigen famil... | NM_001291535.1 | 98% | 94.7% | (many diffs) |
| 6 | human | 102723680 | CT45A9 | cancer/testis antigen famil... | NM_001291540.2 | 98% | 94.7% | (many diffs) |
| 7 | human | 102723680 | CT45A9 | cancer/testis antigen famil... | NM_001321271.1 | 98% | 94.7% | (many diffs) |
| 8 | human | 728911 | CT45A2 | cancer/testis antigen famil... | NM_152582.7 | 98% | 94.7% | (many diffs) |
| 9 | human | 728911 | CT45A2 | cancer/testis antigen famil... | XM_006724783.2 | 98% | 94.7% | (many diffs) |
| 10 | human | 102723680 | CT45A9 | cancer/testis antigen famil... | XM_006724796.2 | 98% | 94.7% | (many diffs) |
| 11 | human | 102723737 | CT45A8 | cancer/testis antigen famil... | XM_006724799.2 | 98% | 94.7% | (many diffs) |
| 12 | human | 102723737 | CT45A8 | cancer/testis antigen famil... | XM_011531241.2 | 98% | 94.7% | (many diffs) |
| 13 | human | 728911 | CT45A2 | cancer/testis antigen famil... | XM_011531389.2 | 98% | 94.7% | (many diffs) |
| 14 | human | 441521 | CT45A5 | cancer/testis antigen famil... | NM_001007551.4 | 97.8% | 94.7% | (many diffs) |
| 15 | human | 541465 | CT45A6 | cancer/testis antigen famil... | NM_001017438.2 | 97.8% | 94.7% | (many diffs) |
| 16 | human | 441521 | CT45A5 | cancer/testis antigen famil... | NM_001172288.2 | 97.8% | 94.7% | (many diffs) |
| 17 | human | 101060211 | CT45A7 | cancer/testis antigen famil... | NM_001291543.2 | 97.8% | 94.7% | (many diffs) |
| 18 | human | 101060211 | CT45A7 | cancer/testis antigen famil... | XM_003960082.4 | 97.8% | 94.7% | (many diffs) |
| 19 | human | 541465 | CT45A6 | cancer/testis antigen famil... | XM_005262425.4 | 97.8% | 94.7% | (many diffs) |
| 20 | human | 101060211 | CT45A7 | cancer/testis antigen famil... | XM_011531229.3 | 97.8% | 94.7% | (many diffs) |
| 21 | human | 441521 | CT45A5 | cancer/testis antigen famil... | XM_011531341.3 | 97.8% | 94.7% | (many diffs) |
| 22 | human | 541465 | CT45A6 | cancer/testis antigen famil... | XM_011531351.2 | 97.8% | 94.7% | (many diffs) |
| 23 | human | 441519 | CT45A3 | cancer/testis antigen famil... | NM_001017435.2 | 97.7% | 94.1% | (many diffs) |
| 24 | human | 441519 | CT45A3 | cancer/testis antigen famil... | NM_001370148.2 | 97.7% | 94.1% | (many diffs) |
| 25 | human | 441519 | CT45A3 | cancer/testis antigen famil... | NM_001370149.1 | 97.7% | 94.1% | (many diffs) |
| 26 | human | 541466 | CT45A1 | cancer/testis antigen famil... | NM_001017417.2 | 97.5% | 93.6% | (many diffs) |
| 27 | human | 541466 | CT45A1 | cancer/testis antigen famil... | XM_005278141.4 | 97.5% | 93.6% | (many diffs) |
| 28 | human | 541466 | CT45A1 | cancer/testis antigen famil... | XM_011531352.1 | 97.5% | 93.6% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 633
- ORF length:
- 567
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC CGATAAAACA GAGAAGGTGG CTGTAGATCC TGAAACTGTG TTTAAACGTC 121 CCAGGGAATG TGACAGTCCT TCGTATCAGA AAAGGCAGAG GATGGCCCTG TTGGCAAGGA 181 AACAAGGAGC AGGAGACAGC CTTATTGCAG GCTCTGCCAT GTCCAAAGAA AAGAAGCTTA 241 TGACAGGACA TGCTATTCCA CCCAGCCAAT TGGATTCTCA GATTGATGAC TTCACTGGTT 301 TCAGCAAAGA TGGGATGATG CAGAAACCTG GTAGCAATGC ACCTGTGGGA GGAAATGTTA 361 CCAGCAATTT CTCTGGAGAT GACCTAGAAT GCAGAGGAAT AGCCTCCTCT CCCAAAAGCC 421 AACAAGAAAT TAATGCTGAT ATAAAATGTC AAGTAGTGAA GGAAATCCGA TGCCTTGGAC 481 GAAAATATGA AAAAATCTTC GAAATGCTTG AAGGAGTGCA AGGACCTACT GCAGTCAGGA 541 AACGATTTTT TGAATCCATC ATCAAGGAAG CAGCAAGATG TATGAGACGA GACTTTGTTA 601 AGCACCTTAA GAAGAAACTG AAACGTATGA TTTGCCCAAC TTTCTTGTAC AAAGTtggca 661 ttataagaaa gcattgctta tcaatttgtt gcaacgaac