Construct: ORF ccsbBroadEn_05683
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016582.1_s300c1, BRDN0000387643
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SPANXN4 (441525)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 441525 | SPANXN4 | SPANX family member N4 | NM_001009613.3 | 100% | 100% | |
| 2 | human | 441525 | SPANXN4 | SPANX family member N4 | XM_017029543.1 | 62.4% | 61.1% | (many diffs) |
| 3 | human | 441525 | SPANXN4 | SPANX family member N4 | XM_017029544.1 | 61.7% | 60.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 366
- ORF length:
- 297
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGAAGAGCCA ACTTCCAGCA CCAACGAGAA TAAAATGAAG AGCCCCTGTG 121 AATCTAACAA AAGAAAAGTT GACAAGAAGA AGAAGAATCT GCACAGAGCC TCAGCCCCTG 181 AACAGAGTTT GAAAGAGACA GAAAAAGCAA AATATCCAAC ATTAGTGTTT TACTGCAGGA 241 AGAATAAGAA AAGAAATTCA AATCAACTGG AGAATAACCA GCCTACAGAG AGCTCCACTG 301 ATCCAATCAA AGAGAAAGGA GACCTAGACA TATCTGCAGG ATCTCCACAG GATGGTGGGC 361 AGAATTTGCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 421 gttgcaacga ac