Construct: ORF ccsbBroadEn_05762
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF001676.1_s300c1, BRDN0000398022
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ACP3 (55)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55 | ACP3 | acid phosphatase 3 | NM_001099.5 | 99.7% | 99.7% | 849C>T;988T>C;1146A>G |
| 2 | human | 55 | ACP3 | acid phosphatase 3 | XM_011512946.1 | 98.3% | 97.9% | (many diffs) |
| 3 | human | 55 | ACP3 | acid phosphatase 3 | NM_001134194.2 | 91.6% | 90.4% | (many diffs) |
| 4 | human | 55 | ACP3 | acid phosphatase 3 | NM_001292037.2 | 91.1% | 91.1% | (many diffs) |
| 5 | human | 55 | ACP3 | acid phosphatase 3 | XM_011512947.2 | 83.7% | 82.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1224
- ORF length:
- 1158
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAG AGCTGCACCC CTCCTCCTGG CCAGGGCAGC AAGCCTTAGC CTTGGCTTCT 121 TGTTTCTGCT TTTTTTCTGG CTAGACCGAA GTGTACTAGC CAAGGAGTTG AAGTTTGTGA 181 CTTTGGTGTT TCGGCATGGA GACCGAAGTC CCATTGACAC CTTTCCCACT GACCCCATAA 241 AGGAATCCTC ATGGCCACAA GGATTTGGCC AACTCACCCA GCTGGGCATG GAGCAGCATT 301 ATGAACTTGG AGAGTATATA AGAAAGAGAT ATAGAAAATT CTTGAATGAG TCCTATAAAC 361 ATGAACAGGT TTATATTCGA AGCACAGACG TTGACCGGAC TTTGATGAGT GCTATGACAA 421 ACCTGGCAGC CCTGTTTCCC CCAGAAGGTG TCAGCATCTG GAATCCTATC CTACTCTGGC 481 AGCCCATCCC GGTGCACACA GTTCCTCTTT CTGAAGATCA GTTGCTATAC CTGCCTTTCA 541 GGAACTGCCC TCGTTTTCAA GAACTTGAGA GTGAGACTTT GAAATCAGAG GAATTCCAGA 601 AGAGGCTGCA CCCTTATAAG GATTTTATAG CTACCTTGGG AAAACTTTCA GGATTACATG 661 GCCAGGACCT TTTTGGAATT TGGAGTAAAG TCTACGACCC TTTATATTGT GAGAGTGTTC 721 ACAATTTCAC TTTACCCTCC TGGGCCACTG AGGACACCAT GACTAAGTTG AGAGAATTGT 781 CAGAATTGTC CCTCCTGTCC CTCTATGGAA TTCACAAGCA GAAAGAGAAA TCTAGGCTCC 841 AAGGGGGTGT CCTGGTCAAT GAAATCCTCA ATCACATGAA GAGAGCAACT CAGATACCAA 901 GCTACAAAAA ACTTATCATG TATTCTGCGC ATGACACTAC TGTGAGTGGC CTACAGATGG 961 CGCTAGATGT TTACAACGGA CTCCTTCCTC CCTATGCTTC TTGCCACTTG ACGGAATTGT 1021 ACTTTGAGAA GGGGGAGTAC TTTGTGGAGA TGCACTATCG GAATGAGACG CAGCACGAGC 1081 CGTATCCCCT CATGCTACCT GGCTGCAGCC CCAGCTGTCC TCTGGAGAGG TTTGCTGAGC 1141 TGGTTGGCCC TGTGATCCCT CAAGACTGGT CCACGGAGTG TATGACCACA AACAGCCATC 1201 AAGGTACTGA GGACAGTACA GATTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1261 agcattgctt atcaatttgt tgcaacgaac