Construct: ORF ccsbBroadEn_05777

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF002704.1_s300c1, BRDN0000397783
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADH1C (126)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 126 ADH1C alcohol dehydrogenase 1C (c... NM_000669.5 99.9% 100% 453A>G
2 human 125 ADH1B alcohol dehydrogenase 1B (c... NM_000668.6 95.7% 94.4% (many diffs)
3 human 124 ADH1A alcohol dehydrogenase 1A (c... NM_000667.4 93.7% 92.8% (many diffs)
4 human 125 ADH1B alcohol dehydrogenase 1B (c... NM_001286650.2 85.4% 84.5% (many diffs)
5 human 126 ADH1C alcohol dehydrogenase 1C (c... NR_133005.2 74.2% (many diffs)
6 mouse 11522 Adh1 alcohol dehydrogenase 1 (cl... NM_007409.2 82.4% 85% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1191
ORF length:
1125
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG CACAGCAGGA AAAGTAATCA AATGCAAAGC AGCTGTGCTA TGGGAGTTAA
121AGAAACCCTT TTCCATTGAG GAGGTAGAGG TTGCACCTCC TAAGGCTCAT GAAGTTCGCA
181TTAAGATGGT GGCTGCAGGA ATCTGTCGTT CAGATGAGCA TGTGGTTAGT GGCAACCTGG
241TGACCCCCCT TCCTGTGATT TTAGGCCATG AGGCAGCCGG CATCGTGGAA AGTGTTGGAG
301AAGGGGTGAC TACAGTCAAA CCAGGTGATA AAGTCATCCC GCTCTTTACT CCTCAGTGTG
361GAAAATGCAG AATTTGTAAA AACCCAGAAA GCAACTACTG CTTGAAAAAT GATCTAGGCA
421ATCCTCGGGG GACCCTGCAG GATGGCACCA GGAGGTTCAC CTGCAGCGGG AAGCCCATCC
481ACCACTTCGT CGGCGTCAGC ACCTTCTCCC AGTACACGGT GGTGGATGAG AATGCAGTGG
541CCAAAATTGA TGCAGCCTCG CCCCTGGAGA AAGTCTGCCT CATTGGCTGT GGATTTTCGA
601CTGGTTATGG GTCTGCAGTC AAAGTTGCCA AGGTCACCCC AGGGTCTACC TGTGCTGTGT
661TTGGCCTGGG AGGGGTCGGC CTATCTGTTG TTATGGGCTG TAAAGCAGCT GGAGCAGCCA
721GAATCATTGC TGTGGACATC AACAAGGACA AATTTGCAAA GGCTAAAGAG TTGGGTGCCA
781CTGAATGCAT CAACCCTCAA GACTACAAGA AACCCATTCA GGAAGTGCTA AAGGAAATGA
841CTGATGGAGG TGTGGATTTT TCGTTTGAAG TCATCGGTCG GCTTGACACC ATGATGGCTT
901CCCTGTTATG TTGTCATGAG GCATGTGGCA CAAGTGTCAT TGTAGGGGTA CCTCCTGATT
961CCCAGAACCT CTCAATAAAC CCTATGCTGC TACTGACTGG ACGCACGTGG AAAGGAGCTA
1021TTTTTGGAGG CTTTAAGAGT AAAGAATCTG TCCCCAAACT TGTGGCTGAC TTTATGGCTA
1081AGAAGTTTTC ACTGGATGCA TTAATAACAA ATATTTTACC TTTTGAAAAA ATAAATGAAG
1141GATTTGACCT GCTTCGCTCT GGAAAGAGTA TCCGTACCGT CCTGACGTTT TGCCCAACTT
1201TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)