Construct: ORF ccsbBroadEn_05869
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012546.1_s300c1, BRDN0000388979
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ATP5PB (515)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 515 | ATP5PB | ATP synthase peripheral sta... | NM_001688.5 | 99.8% | 100% | 351T>C |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 834
- ORF length:
- 768
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGCT GTCCCGGGTG GTACTTTCCG CCGCCGCCAC AGCGGCCCCC TCTCTGAAGA 121 ATGCAGCCTT CCTAGGTCCA GGGGTATTGC AGGCAACAAG GACCTTTCAT ACAGGGCAGC 181 CACACCTTGT CCCTGTACCA CCTCTTCCTG AATACGGAGG AAAAGTTCGT TATGGACTGA 241 TCCCTGAGGA ATTCTTCCAG TTTCTTTATC CTAAAACTGG TGTAACAGGA CCCTATGTAC 301 TCGGAACTGG GCTTATCTTG TACGCTTTAT CCAAAGAAAT ATATGTGATT AGCGCAGAGA 361 CCTTCACTGC CCTATCAGTA CTAGGTGTAA TGGTCTATGG AATTAAAAAA TATGGCCCCT 421 TTGTTGCAGA CTTTGCTGAT AAACTCAATG AGCAAAAACT TGCCCAACTA GAAGAGGCGA 481 AGCAGGCTTC CATCCAACAC ATCCAGAATG CAATTGATAC GGAGAAGTCA CAACAGGCAC 541 TGGTTCAGAA GCGCCATTAC CTTTTTGATG TGCAAAGGAA TAACATTGCT ATGGCTTTGG 601 AAGTTACTTA CCGGGAACGA CTGTATAGAG TATATAAGGA AGTAAAGAAT CGCCTGGACT 661 ATCATATATC TGTGCAGAAC ATGATGCGTC GAAAGGAACA AGAACACATG ATAAATTGGG 721 TGGAGAAGCA CGTGGTGCAA AGCATCTCCA CACAGCAGGA AAAGGAGACA ATTGCCAAGT 781 GCATTGCGGA CCTAAAGCTG CTGGCAAAGA AGGCTCAAGC ACAGCCAGTT ATGTACCCAA 841 CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac