Construct: ORF ccsbBroadEn_05975
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013070.1_s300c1, BRDN0000394835
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CDH9 (1007)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 1007 | CDH9 | cadherin 9 | NM_016279.4 | 99.9% | 99.7% | 17A>G;113C>T |
| 2 | mouse | 12565 | Cdh9 | cadherin 9 | NM_009869.1 | 86.4% | 91.1% | (many diffs) |
| 3 | mouse | 12565 | Cdh9 | cadherin 9 | XM_006520019.3 | 86.4% | 91.1% | (many diffs) |
| 4 | mouse | 12565 | Cdh9 | cadherin 9 | XM_006520020.3 | 86.4% | 91.1% | (many diffs) |
| 5 | mouse | 12565 | Cdh9 | cadherin 9 | XM_011245337.2 | 78.5% | 82.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2436
- ORF length:
- 2367
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG 61 TTGGCACCAT GAGGACTTAC CATTGTATAC CATTATTCAT CTGGACCTAT ATGTTCCATA 121 CAGTTGACAC CATCCTATTA CAAGAAAAAC CTAACAGTTA TTTATCAAGC AAAAAGATAG 181 TGGGTCTGAC AAAAGATGAC GGTAAAATGC TACGTCGCAC CAAGCGTGGC TGGATGTGGA 241 ATCAGTTCTT CTTATTGGAA GAGTACACAG GTACTGACAC ACAATATGTA GGCAAGCTTC 301 ACACTGACCA AGATAAAGGA GATGGAAATT TAAAATACAT ACTAACAGGA GATGGGGCTG 361 GCAGTCTATT TGTTATAGAT GAAAATACAG GAGACATTCA TGCTGCAAAG AAACTAGACA 421 GAGAAGAAAA ATCTCTGTAC ATTCTTCGTG CCAAGGCTAT AGACAGAAAA ACTGGGCGGC 481 AGGTGGAACC GGAATCGGAA TTTATCATTA AAATACATGA TATCAATGAC AATGAGCCAA 541 AATTTACAAA AGACTTATAC ACTGCCAGTG TTCCTGAAAT GTCTGGAGTC GGTACATCTG 601 TTATACAAGT AACTGCAACA GATGCAGATG ACGCCAACTA TGGAAATAGT GCCAAAGTGG 661 TCTATAGCAT ATTGCAAGGA CAGCCATATT TTTCAGTGGA CCCAGAATCA GGCATAATAA 721 AAACTGCATT ACCAGACATG AGCAGAGAAA ATAGAGAGCA GTACCAGGTT GTTATACAGG 781 CCAAAGACAT GGGTGGCCAG ATGGGAGGCC TTTCTGGAAC CACCACAGTG AACATCACGC 841 TGACAGATGT CAACAACAAC CCTCCTCGAT TTCCCCAGAG TACGTATCAA TTTAATTCTC 901 CTGAGTCTGT ACCTCTTGGA ACTCATCTTG GAAGGATAAA AGCCAATGAC CCTGACGTGG 961 GGGAAAATGC AGAAATGGAG TATAGCATTG CTGAAGGAGA TGGTGCAGAC ATGTTCGATG 1021 TCATCACTGA CAAGGATACA CAGGAAGGGA TTATAACTGT CAAACAGAAT TTAGATTTTG 1081 AAAATCAAAT GCTCTATACT TTAAGAGTGG ATGCAAGTAA CACTCACCCT GATCCACGAT 1141 TCTTACACCT GGGACCTTTC AAAGATACAG CTGTGGTCAA AATATCTGTG GAAGATATAG 1201 ATGAGCCTCC TGTGTTCACT AAAGTCTCTT ACTTGATAGA AGTAGATGAA GATGTAAAGG 1261 AGGGCAGTAT CATTGGACAG GTTACAGCAT ACGATCCAGA TGCCAGGAAC AATTTAATAA 1321 AGTACTCTGT TGATCGGCAT ACTGATATGG ACCGTATTTT TGGTATTCAC TCAGAAAATG 1381 GTTCTATTTT CACTTTGAAA GCCCTTGACC GGGAATCATC TCCTTGGCAT AACATCACTG 1441 TTACAGCCAC AGAAATAAAT AACCCAAAAC AAAGTAGCCA CATCCCTGTC TTCATCAGAA 1501 TTCTAGATAT AAATGACCAT GCTCCGGAAT TTGCCATGTA TTATGAAACA TTTGTTTGTG 1561 AAAATGCAAA ACCTGGGCAG TTGATTCAGA CTGTCAGTGT CATGGATAAG GATGACCCTC 1621 CCCGAGGTCA CAAATTCTTT TTTGAACCAG TGCCAGAATT TACTCTCAAT CCGAATTTCA 1681 CCATTGTAGA TAATAAAGAT AATACAGCAG GAATCATGAC TCGGAAAGAT GGCTACAGTC 1741 GCAACAAAAT GAGCACCTAC TTATTGCCGA TTTTAATCTT TGACAACGAT TATCCAATTC 1801 AAAGCAGCAC TGGTACACTC ACTATCCGTG TGTGTGCCTG CGATAATCAA GGAAACATGC 1861 AATCCTGCAC CGCAGAAGCC CTGATCCTTT CAGCCGGCCT GAGCACGGGA GCTCTCGTTG 1921 CGATTCTACT CTGTGTCCTC ATACTGCTTA TTTTAGTCGT GTTGTTTGCT GCATTGAAGA 1981 GGCAAAGAAA AAAGGAACCT CTGATAATTT CAAAAGACGA TGTCCGGGAC AACATTGTGA 2041 CCTACAACGA TGAAGGCGGC GGGGAAGAAG ATACCCAAGC TTTTGACATT GGCACATTAA 2101 GGAATCCAGA GGCAAGAGAA GACAGTAAAC TTAGACGGGA TGTAATGCCT GAAACTATTT 2161 TTCAGATAAG GAGGACTGTG CCTCTGTGGG AAAATATTGA TGTACAAGAT TTTATCCATC 2221 GAAGATTAAA AGAAAACGAC GCAGACCCAA GTGCACCTCC ATATGATTCG CTGGCAACGT 2281 ATGCCTATGA AGGGAATGAT TCCATAGCAG ATTCGCTCAG TTCTTTGGAA TCTCTCACAG 2341 CTGATTGTAA CCAAGATTAT GATTACCTCA GTGACTGGGG GCCTCGTTTC AAAAAACTTG 2401 CCGATATGTA TGGGGGTGAT GATAGTGACC GAGACTTGCC AACTTTCTTG TACAAAGTtg 2461 gcattataag aaagcattgc ttatcaattt gttgcaacga ac