Construct: ORF ccsbBroadEn_05975

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013070.1_s300c1, BRDN0000394835
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CDH9 (1007)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1007 CDH9 cadherin 9 NM_016279.4 99.9% 99.7% 17A>G;113C>T
2 mouse 12565 Cdh9 cadherin 9 NM_009869.1 86.4% 91.1% (many diffs)
3 mouse 12565 Cdh9 cadherin 9 XM_006520019.3 86.4% 91.1% (many diffs)
4 mouse 12565 Cdh9 cadherin 9 XM_006520020.3 86.4% 91.1% (many diffs)
5 mouse 12565 Cdh9 cadherin 9 XM_011245337.2 78.5% 82.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2436
ORF length:
2367
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAGAAAG
61TTGGCACCAT GAGGACTTAC CATTGTATAC CATTATTCAT CTGGACCTAT ATGTTCCATA
121CAGTTGACAC CATCCTATTA CAAGAAAAAC CTAACAGTTA TTTATCAAGC AAAAAGATAG
181TGGGTCTGAC AAAAGATGAC GGTAAAATGC TACGTCGCAC CAAGCGTGGC TGGATGTGGA
241ATCAGTTCTT CTTATTGGAA GAGTACACAG GTACTGACAC ACAATATGTA GGCAAGCTTC
301ACACTGACCA AGATAAAGGA GATGGAAATT TAAAATACAT ACTAACAGGA GATGGGGCTG
361GCAGTCTATT TGTTATAGAT GAAAATACAG GAGACATTCA TGCTGCAAAG AAACTAGACA
421GAGAAGAAAA ATCTCTGTAC ATTCTTCGTG CCAAGGCTAT AGACAGAAAA ACTGGGCGGC
481AGGTGGAACC GGAATCGGAA TTTATCATTA AAATACATGA TATCAATGAC AATGAGCCAA
541AATTTACAAA AGACTTATAC ACTGCCAGTG TTCCTGAAAT GTCTGGAGTC GGTACATCTG
601TTATACAAGT AACTGCAACA GATGCAGATG ACGCCAACTA TGGAAATAGT GCCAAAGTGG
661TCTATAGCAT ATTGCAAGGA CAGCCATATT TTTCAGTGGA CCCAGAATCA GGCATAATAA
721AAACTGCATT ACCAGACATG AGCAGAGAAA ATAGAGAGCA GTACCAGGTT GTTATACAGG
781CCAAAGACAT GGGTGGCCAG ATGGGAGGCC TTTCTGGAAC CACCACAGTG AACATCACGC
841TGACAGATGT CAACAACAAC CCTCCTCGAT TTCCCCAGAG TACGTATCAA TTTAATTCTC
901CTGAGTCTGT ACCTCTTGGA ACTCATCTTG GAAGGATAAA AGCCAATGAC CCTGACGTGG
961GGGAAAATGC AGAAATGGAG TATAGCATTG CTGAAGGAGA TGGTGCAGAC ATGTTCGATG
1021TCATCACTGA CAAGGATACA CAGGAAGGGA TTATAACTGT CAAACAGAAT TTAGATTTTG
1081AAAATCAAAT GCTCTATACT TTAAGAGTGG ATGCAAGTAA CACTCACCCT GATCCACGAT
1141TCTTACACCT GGGACCTTTC AAAGATACAG CTGTGGTCAA AATATCTGTG GAAGATATAG
1201ATGAGCCTCC TGTGTTCACT AAAGTCTCTT ACTTGATAGA AGTAGATGAA GATGTAAAGG
1261AGGGCAGTAT CATTGGACAG GTTACAGCAT ACGATCCAGA TGCCAGGAAC AATTTAATAA
1321AGTACTCTGT TGATCGGCAT ACTGATATGG ACCGTATTTT TGGTATTCAC TCAGAAAATG
1381GTTCTATTTT CACTTTGAAA GCCCTTGACC GGGAATCATC TCCTTGGCAT AACATCACTG
1441TTACAGCCAC AGAAATAAAT AACCCAAAAC AAAGTAGCCA CATCCCTGTC TTCATCAGAA
1501TTCTAGATAT AAATGACCAT GCTCCGGAAT TTGCCATGTA TTATGAAACA TTTGTTTGTG
1561AAAATGCAAA ACCTGGGCAG TTGATTCAGA CTGTCAGTGT CATGGATAAG GATGACCCTC
1621CCCGAGGTCA CAAATTCTTT TTTGAACCAG TGCCAGAATT TACTCTCAAT CCGAATTTCA
1681CCATTGTAGA TAATAAAGAT AATACAGCAG GAATCATGAC TCGGAAAGAT GGCTACAGTC
1741GCAACAAAAT GAGCACCTAC TTATTGCCGA TTTTAATCTT TGACAACGAT TATCCAATTC
1801AAAGCAGCAC TGGTACACTC ACTATCCGTG TGTGTGCCTG CGATAATCAA GGAAACATGC
1861AATCCTGCAC CGCAGAAGCC CTGATCCTTT CAGCCGGCCT GAGCACGGGA GCTCTCGTTG
1921CGATTCTACT CTGTGTCCTC ATACTGCTTA TTTTAGTCGT GTTGTTTGCT GCATTGAAGA
1981GGCAAAGAAA AAAGGAACCT CTGATAATTT CAAAAGACGA TGTCCGGGAC AACATTGTGA
2041CCTACAACGA TGAAGGCGGC GGGGAAGAAG ATACCCAAGC TTTTGACATT GGCACATTAA
2101GGAATCCAGA GGCAAGAGAA GACAGTAAAC TTAGACGGGA TGTAATGCCT GAAACTATTT
2161TTCAGATAAG GAGGACTGTG CCTCTGTGGG AAAATATTGA TGTACAAGAT TTTATCCATC
2221GAAGATTAAA AGAAAACGAC GCAGACCCAA GTGCACCTCC ATATGATTCG CTGGCAACGT
2281ATGCCTATGA AGGGAATGAT TCCATAGCAG ATTCGCTCAG TTCTTTGGAA TCTCTCACAG
2341CTGATTGTAA CCAAGATTAT GATTACCTCA GTGACTGGGG GCCTCGTTTC AAAAAACTTG
2401CCGATATGTA TGGGGGTGAT GATAGTGACC GAGACTTGCC AACTTTCTTG TACAAAGTtg
2461gcattataag aaagcattgc ttatcaattt gttgcaacga ac

Download FASTA (ORF) (Full)